notebook CI #534
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| name: notebook CI | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the develop branch | |
| schedule: | |
| - cron: '30 14 * * 1,3,5' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| env: | |
| NJOY: ${GITHUB_WORKSPACE}/NJOY2016/build/njoy | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| with: | |
| # The branch, tag or SHA to checkout. When checking out the repository that | |
| # triggered a workflow, this defaults to the reference or SHA for that event. | |
| # Otherwise, defaults to `master`. | |
| ref: 'v1.0' | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.x" | |
| # Run commands using the runners shell | |
| - name: clone and install njoy | |
| run: git clone https://github.com/njoy/NJOY2016.git && (cd NJOY2016 && mkdir build && cd build && cmake -DPython3_EXECUTABLE=$(which python3) .. && make) | |
| - name: remove njoy tests from unit testing | |
| run: rm -rf NJOY2016/tests | |
| - name: install general python dependencies | |
| run: pip install sphinx sphinx_rtd_theme codecov numpydoc coveralls pytest-cov nbval | |
| - name: install sandy's requirements | |
| run: pip install -r requirements.txt | |
| - name: install jupyter packages to run notebooks | |
| run: pip install jupyterlab matplotlib seaborn | |
| - name: install sandy | |
| run: python setup.py install --user | |
| - name: run notebooks | |
| run: | | |
| cd notebooks | |
| mkdir executed_notebooks | |
| jupyter nbconvert --to notebook --execute *.ipynb --ExecutePreprocessor.kernel_name='python3' --inplace | |
| mv *.ipynb executed_notebooks/ | |
| - name: Pushes to another repository | |
| id: push_directory | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.API_TOKEN_GITHUB }} | |
| with: | |
| source-directory: notebooks/executed_notebooks/ | |
| destination-github-username: 'luca-fiorito-11' | |
| destination-repository-name: 'sandy_notebooks' | |
| user-email: lucafiorito.11@gmail.com | |
| commit-message: pushing notebooks... | |
| target-branch: executed_notebooks_v1.0 |