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feat(ingest): Allow option to group segments with ground truth #3509

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Summary

Currently we only group segments heuristically but many organisms also have assembly information where we have ground truth grouping information - sadly this is not an element of the ncbi dataset that we download but it can be downloaded separately to create a source of truth JSON that can be used for grouping segments.

This is great as we cannot group segments when there is any ambiguity, and it is not uncommon for there to be metadata differences between segments within an assembly.

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PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

@anna-parker anna-parker added the preview Triggers a deployment to argocd label Jan 10, 2025
@anna-parker anna-parker removed the preview Triggers a deployment to argocd label Jan 10, 2025
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