TRUST4 v1.0.2-beta

• Add barcode correction for 10X Genomics data
• Support wildcards in -1 -2/-u options
• Add the options to specify the part of the reads for assembly (can be used to trim barcode/UMI in the read)
• Add a user-friendly script to process SMARTseq data with TRUST4
• Fix an issue of wrong abundance calculation in _cdr3.out file introduced after v1.0.0. This affects the cid assignment in the final report file.
• Dockerfile is available at https://github.com/CCBR/Dockers/tree/master/rnaseq/ccbr_trust4 and also on DockerHub (Thanks to @skchronicles)
• Fix a compilation issue on macOS

TRUST v1.0.1

• Improve the performance for paired-end 10X Genomics data

TRUST4 v1.0.1-beta

• Add several scripts for postprocessing
  Extract full-length assemblies
  Cluster clonotypes in trust_cdr3.out file
  Convert TRUST4 barcode report file to 10X VDJ format
• Can handle repertoire sequencing data by using "--repseq"
• Fix several bugs, especially for data with barcodes (10X Genomics)
• Fix several issues for compile

TRUST4 v1.0.0

• The formal release of TRUST4
• Change the report tsv format: (1) Use "." to represent missing genes for compatibility with other down-streaming analysis tool. (2) Add one column for representative the contig/consensus id (3) Only show complete CDR3s by default
• Fix several bugs

TRUST4 v0.2.0_binary

• Support use raw sequence (fq/fa files) as input
• Support barcode to handle single cell data, e.g. 10X Genomics
• Fix several bugs

TRUST4 v0.1.2_binary

• Incorporating the simple report in the main framework.
• Fix other issues

TRUST4 v0.1.1_binary

• Annotate D genes.
• Change the output format for *_annot.fa and *_cdr3.out files.