dummy db

linsalrob · Oct 3, 2024 · 5555d76 · 5555d76
1 parent 4060676
commit 5555d76
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Showing 7 changed files with 4 additions and 3 deletions.
diff --git a/sphae.sh b/sphae.sh
@@ -12,8 +12,8 @@
 #SBATCH --qos=hc-concurrent-jobs
 
 #sphae install
-sphae run --input tests/data/illumina-subset --threads 64 -k 
-sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k
-sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k --no_medaka 
+#sphae run --input tests/data/illumina-subset --threads 64 -k 
+#sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k
+sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k --no_medaka  --db_dir tests/db
 #sphae annotate --genome tests/data/genome --threads 64
 
diff --git a/tests/db/Pfam35.0/Pfam-A.hmm.gz b/tests/db/Pfam35.0/Pfam-A.hmm.gz
@@ -0,0 +1 @@
+cdscds
diff --git a/tests/db/checkv-db-v1.5/genome_db/checkv_reps.dmnd b/tests/db/checkv-db-v1.5/genome_db/checkv_reps.dmnd
diff --git a/tests/db/checkv-db-v1.5/genome_db/checkv_reps.tsv b/tests/db/checkv-db-v1.5/genome_db/checkv_reps.tsv
diff --git a/tests/db/pharokka_db b/tests/db/pharokka_db
diff --git a/tests/db/phold b/tests/db/phold
diff --git a/tests/db/phynteny_models_zenodo b/tests/db/phynteny_models_zenodo