Further clean-ups to the repo: #73
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on: | |
push: | |
branches: | |
- master | |
pull_request: | |
name: "R comparison" | |
jobs: | |
build: | |
name: Compare to mnncorrect.ref | |
runs-on: ubuntu-latest | |
container: bioconductor/bioconductor_docker:devel | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Get latest CMake | |
uses: lukka/get-cmake@latest | |
- name: Prebuild the stuff | |
run: cmake -S . -B build | |
- name: Set the package directory | |
run: echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
- name: Restore the package directory | |
uses: actions/cache@v4 | |
with: | |
path: ${{ env.R_PKG_DIR }} | |
key: preinstalled-packages | |
- name: Install dependencies | |
shell: Rscript {0} | |
run: BiocManager::install(c("Rcpp", "testthat", "BiocNeighbors")) | |
- name: Install reference package | |
run: R CMD INSTALL tests/R/package | |
- name: Run the comparisons | |
shell: Rscript {0} | |
run: | | |
setwd("tests/R/package/tests") | |
source("testthat.R") |