Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

dependencies ‘graph’, ‘Rgraphviz’, ‘marray’, ‘affy’, ‘Biobase’, ‘limma’, ‘cmdstanr’, ‘M3C’, ‘glmmADMB’, ‘rnaturalearthhires’, ‘INLA’, ‘RDCOMClient’, ‘Biostrings’, ‘gurobi’, ‘rrelaxiv’, ‘pogs’, ‘Vdgraph’, ‘rcbc’, ‘mixOmics’, ‘pkgmaker’, ‘genefilter’, ‘sva’, ‘rhdf5’, ‘RandomFields’, ‘ExactData’, ‘ComplexHeatmap’, ‘impute’, ‘preprocessCore’, ‘GO.db’, ‘AnnotationDbi’, ‘org.Hs.eg.db’, ‘org.Mm.eg.db’, ‘minet’, ‘sylly.de’, ‘sylly.es’, ‘globaltest’, ‘Icens’, ‘mlr3proba’, ‘rkward’, ‘cairoDevice’, ‘RGtk2’, ‘BiocVersion’, ‘BiocStyle’, ‘rtracklayer’, ‘GenomicRanges’, ‘IRanges’, ‘S4Vectors’, ‘starsdata’, ‘RTCGA.rnaseq’, ‘mvPot’, ‘kmndirs’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘loe’, ‘biomaRt’, ‘KEGGgraph’, ‘kerdiest’, ‘snpStats’, ‘taxidata’ are not available