Support N allele

leexgh · Oct 6, 2023 · f3020f2 · f3020f2
1 parent 7a4dc7a
commit f3020f2
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.../main/java/org/cbioportal/genome_nexus/service/cached/CachedVariantAnnotationFetcher.java b/.../main/java/org/cbioportal/genome_nexus/service/cached/CachedVariantAnnotationFetcher.java
@@ -34,7 +34,7 @@ public CachedVariantAnnotationFetcher(ExternalResourceTransformer<VariantAnnotat
 
     @Override
     protected Boolean isValidId(String id) {
-        return !id.contains("N") && !id.contains("-") && !id.contains("undefined") && !id.contains("g.0") && id.contains(":") && id.split(":")[1].matches(".*\\d+.*");
+        return !id.contains("-") && !id.contains("undefined") && !id.contains("g.0") && id.contains(":") && id.split(":")[1].matches(".*\\d+.*");
     }
 
     @Override

diff --git a/...java/org/cbioportal/genome_nexus/service/cached/CachedVariantRegionAnnotationFetcher.java b/...java/org/cbioportal/genome_nexus/service/cached/CachedVariantRegionAnnotationFetcher.java
@@ -39,7 +39,7 @@ protected Boolean isValidId(String id)
         // 17:36002278-36002277:1/A
         //  1:206811015-206811016:1/-
         return (
-            !id.contains("N") && !id.contains("undefined") && !id.contains("g.") &&
+            !id.contains("undefined") && !id.contains("g.") &&
             id.contains("-") &&
             // should have two :
             (id.length() - id.replace(":","").length() == 2) &&