Fix comments

leexgh · Aug 27, 2024 · d45822f · d45822f
1 parent 71eebcd
commit d45822f
Showing 1 changed file with 9 additions and 2 deletions.
diff --git a/.../java/org/cbioportal/genome_nexus/component/annotation/VariantClassificationResolver.java b/.../java/org/cbioportal/genome_nexus/component/annotation/VariantClassificationResolver.java
@@ -52,8 +52,15 @@ else if (variantAnnotation != null && variantAnnotation.getIntergenicConsequence
             // pick the highest priority consequence from the intergenic consequences
             // get every getConsequenceTerms() from each intergenic consequence and put in a list
             variantClassification = this.resolveVariantClassification(
-                this.consequencePrioritizer.pickHighestPriorityConsequence(variantAnnotation.getIntergenicConsequences().stream().flatMap(consequence -> consequence.getConsequenceTerms().stream()).collect(Collectors.toList())),
-                    variantType, isInframe);
+                this.consequencePrioritizer.pickHighestPriorityConsequence(
+                    variantAnnotation.getIntergenicConsequences()
+                    .stream()
+                    .flatMap(consequence -> consequence.getConsequenceTerms()
+                    .stream())
+                    .collect(Collectors.toList())),
+                    variantType,
+                    isInframe
+            );
         }
         // use the most severe consequence to resolve the variant classification
         else if (variantAnnotation != null)