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rad-if experiments #183

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rad-if experiments #183

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09a4409
rad-if experiments
jbusecke Nov 5, 2024
a463ce2
fix tests for datasets without time.
jbusecke Nov 5, 2024
bccf7b0
Update recipe.py
jbusecke Nov 5, 2024
ed01e98
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 5, 2024
d3cbe35
Update requirements.txt
jbusecke Nov 5, 2024
1512078
Update recipe.py
jbusecke Nov 6, 2024
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3 changes: 2 additions & 1 deletion feedstock/iids_pr.yaml
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Original file line number Diff line number Diff line change
@@ -1 +1,2 @@
- "CMIP6.*.*.[CNRM-CM6-1,CanESM5].historical.r1i1p1f1.Omon.[tos, so].*.*"
# - "CMIP6.*.*.[CNRM-CM6-1,CanESM5].historical.r1i1p1f1.Omon.[tos, so].*.*"
- 'CMIP6.RFMIP.*.*.rad-irf.*.Efx.*.*.*'
13 changes: 11 additions & 2 deletions feedstock/recipe.py
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Expand Up @@ -158,6 +158,15 @@ async def get_recipe_inputs():
for iid, data in recipe_data.items():
urls = get_sorted_http_urls_from_iid_dict(data)
pattern = pattern_from_file_sequence(urls, concat_dim="time")

# to accomodate single file we cannot parse target chunks (https://github.com/pangeo-forge/pangeo-forge-recipes/issues/275)
if len(urls) > 1:
chunk_fn = dynamic_chunking_func
combine_dims = pattern.combine_dim_keys
else:
chunk_fn = None
combine_dims = []

recipes[iid] = (
f"Creating {iid}" >> beam.Create(pattern.items())
# | CheckpointFileTransfer(
Expand All @@ -176,8 +185,8 @@ async def get_recipe_inputs():
| Preprocessor()
| StoreToZarr(
store_name=f"{iid}.zarr",
combine_dims=pattern.combine_dim_keys,
dynamic_chunking_fn=dynamic_chunking_func,
combine_dims=combine_dims,
dynamic_chunking_fn=chunk_fn,
)
| InjectAttrs({"pangeo_forge_api_responses": data})
| ConsolidateDimensionCoordinates()
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11 changes: 3 additions & 8 deletions feedstock/requirements.txt
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@@ -1,13 +1,8 @@
leap-data-management-utils==0.0.12
git+https://github.com/leap-stc/leap-data-management-utils.git@allow-no-time-in-tests
#leap-data-management-utils==0.0.12
git+https://github.com/jbusecke/pangeo-forge-esgf.git@new-request-scheme
dynamic-chunks==0.0.3
#git+https://github.com/pangeo-forge/pangeo-forge-recipes@feature/concurrency-control
git+https://github.com/ranchodeluxe/xarray@ranchodeluxe-patch-1#egg=xarray
git+https://github.com/ranchodeluxe/rioxarray
git+https://github.com/ranchodeluxe/datatree@main#egg=xarray-datatree
git+https://github.com/pangeo-forge/pangeo-forge-recipes@jb/xarray-hack #see @gc/cached_disabled but with cache
#git+https://github.com/moradology/httpfs-sync.git@feature/pool-reuse
#httpfs-sync>=0.0.2
pangeo-forge-recipes==0.10.8
zarr==2.16.1
gcsfs
apache-beam[gcp]