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Cyclo lc (#50)
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briling authored May 24, 2024
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8 changes: 8 additions & 0 deletions results/auto-generated-data-for-gnuplot/lc.dat
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,14 @@
0.8 4.927136126264077 0.21550055367576393 4.934675048321623 0.17680042171405216


#cyclo
#training_size inreact_mean inreact_std equireact_mean equireact_std
0.1 3.871330697613046 0.15879358968811522 3.881159631717355 0.172482026905275
0.2 3.3551722696169293 0.11082803173354647 3.326070965684868 0.1544649328763298
0.4 2.78320423784957 0.07376655588963095 2.7703433835649864 0.09091172328870153
0.8 2.3615039049943967 0.047200476959143374 2.3142308786104673 0.07941888150657982


#proparg
#training_size inreact_mean inreact_std equireact_mean equireact_std
0.1 0.9389208112846317 0.21737858562981666 0.9175845853672732 0.19872278061549556
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2 changes: 1 addition & 1 deletion results/get-tables.py
Original file line number Diff line number Diff line change
Expand Up @@ -363,7 +363,7 @@ def dump_extrapolation_data(geometry='dft', use_H=False, use_rmse=False, invaria
def dump_lc_data(geometry='dft', use_H=False, use_rmse=False, splitter='random', atom_mapping='true'):
h_key = "withH" if use_H else "noH"
with open(f'{outdir}/lc.dat', 'w') as f:
for dataset in ['gdb', 'proparg']:
for dataset in ['gdb', 'cyclo', 'proparg']:
print(f'#{dataset}', file=f)
print('#training_size inreact_mean inreact_std equireact_mean equireact_std', file=f)
for training_size in [0.1, 0.2, 0.4, 0.8]:
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110 changes: 110 additions & 0 deletions results/results.txt
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Expand Up @@ -485,6 +485,106 @@ cv10-proparg-inv-random-noH-dft-true-ns64-nv64-d64-l3-vector-diff-node 0.3270345
cv10-proparg-inv-random-noH-dft-normal-ns64-nv64-d64-l3-vector-diff-node 0.33915456505070285 0.06463822289726959 0.604028476715025 0.16326652699523833


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f1liywgu lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 123 2.7634353806943563 3.7307126115650977
c6xy3wo2 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 123 3.43409820867205 4.617381496798491
te9nv16m lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 123 3.8475848361427554 5.010902250601415
obdgm4eq lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 123 4.561974838005486 5.877522948070882
7lj9cvm6 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 130 2.273053868373371 3.23577139105735
88jrur6z lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 132 2.3269152609564334 3.191134860821052
2pyf60y1 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 129 2.2431296288129747 3.1604459600788117
o5zdegz5 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 131 2.276662597857495 3.134205280944454
nzkw0byr lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 128 2.3149772184625146 3.093967337616858
k3jbpm89 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 132 2.835035893869202 3.9521799986887984
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tnhgk6pi lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 129 2.7123907602977595 3.6991698029874143
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b1ntnkho lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 132 4.586263204317889 6.05007302038459
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krntpaw3 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 131 4.477283405535161 5.803447608220168
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ucwy8ln9 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 129 4.502548048160125 5.939985879991154
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kjsxp90i lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 128 3.3540387458111596 4.356742080516983
rgj1gk2h lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 123 2.7537852026092016 3.6548199932266696
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d8d91yec lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 128 3.744364994744247 4.93934579889987
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1doruqlb lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 127 3.7929885613106977 5.018103446569925
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wubnuv00 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 126 4.018844626902753 5.562943454097718
2zz2uovy lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 125 3.923546982317388 5.258690883953909
nliph5ug lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 123 3.365480553015606 4.5130207881540505
revbf0sn lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 124 3.446736209093852 4.605609490970701
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55vm43bk lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 125 4.370714434883996 5.967766442223908
byksk24k lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 131 2.306063538310944 3.1259436356184342
88z4hl7o lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 124 4.08230762577785 5.385652026521615
3b5w9eg3 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 132 3.4244967520619665 4.56074491385122
iq4a1l1a lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 123 3.695412527404192 4.938981467073844
hwcn53d5 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 130 2.413460976549199 3.532925080556419
s429qbuj lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 132 4.150366870903795 5.541686813069954
7juo189s lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 128 2.3778069922460436 3.236602865745675
fy8vusr2 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 124 4.615407299348131 6.153474678122563
314i4bu9 lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 123 4.448522214545382 5.820062230758308
0yxg7bdu lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 132 4.461948240912422 5.807950343058886
ou68d900 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 126 2.450684726100887 3.7884902584798974
jd6bserm lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 127 2.3466076517662224 3.281139377532536
6jze2q04 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 129 2.329226832344799 3.310866708240668
42j68jbb lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 131 2.6821048517231043 3.7013779190035447
gg5gdgft lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 128 2.7556924753435244 3.70729460577031
jebwp5j8 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 129 2.8130526626212697 3.792476564341234
t01kou1f lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 130 2.7060932366953296 3.802383360646819
ficxip2k lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 127 2.9179621402978553 4.055288240169078
eir2gzv9 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 125 2.384987747218807 3.240765628146322
f2z24gn6 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 126 2.7687599463010075 4.151538291707904
p1uvseta lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 124 2.342020291780615 3.256115851922863
0tdcuz6f lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 131 3.235364694212303 4.297693750412906
emtduhk5 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 130 3.1968277617912726 4.408860905747964
5f7a3kqs lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 129 3.2011718665943487 4.232978367287684
8uc1wwow lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 128 3.348040314262021 4.397170366496288
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gkqkjs5h lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 130 3.931723568008775 5.295409303937478
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7p1jaw56 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 131 4.433036207936458 5.847007158824371
jhrihljl lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 129 3.731066486393488 4.913265012106455
gd9p4099 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 127 3.4121958739150515 4.658763934864062
ssog2hnl lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 128 3.781027849705411 4.898097325772339
w1c964rq lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 130 4.470512304748602 5.862089442905129
s6cysk18 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 129 4.645348941636544 6.110438191109338
pg1b6cjn lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 127 3.852388019892156 5.14849248026266
94cakhjk lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 128 4.446722606057375 5.786572803145428
pivzp0nq lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 126 4.078937371559246 5.65873975366986
gmspz3ki lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 125 2.820477513636937 3.687065291998151
1pd1v8if lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 127 4.3434892888808605 5.633350154028574
e19gcin2 lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 126 4.679026075311389 6.408173723241345
gb46rtqs lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 124 2.7135543624714753 3.7064950504333374
60jg1xdy lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 125 3.3433245535768625 4.394292485394443
72fij06z lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 124 3.391544010792914 4.542263672686529
pv78f26v lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 125 3.900210069326926 5.160781477372865
p13y6x4o lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 125 4.220003159563144 5.7751288949897255
fymq1yaq lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 124 3.881491322188323 5.1485650602049144
cjko2kqz lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 124 4.708828980040805 6.155985055643573
xxvxoitm cv10-cyclo-ydesc-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node 132 5.014233689119474 5.96215513777102
wwbpcjfa cv10-cyclo-ydesc-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node 131 4.296190496730141 5.2815680465651935
sivmnxai cv10-cyclo-ydesc-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node 130 4.869291401627023 5.909376178013074
Expand Down Expand Up @@ -1046,6 +1146,16 @@ f3i590i3 cv10-cyclo-inv-random-noH-dft-normal-ns64-nv48-d48-l2-energy-diff-node
44v533e1 cv10-cyclo-inv-random-noH-dft-normal-ns64-nv48-d48-l2-energy-diff-node 124 2.382396623875379 3.216635865224172
q9l9xigh cv10-cyclo-inv-random-noH-dft-normal-ns64-nv48-d48-l2-energy-diff-node 125 2.3817891627896377 3.223348069351869

lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 2.3615039049943967 0.047200476959143374 3.3187403308757717 0.18669063580367293
lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 2.78320423784957 0.07376655588963095 3.8321948462710274 0.16067193584731704
lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 3.3551722696169293 0.11082803173354647 4.511847961814634 0.21065105030573766
lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 3.871330697613046 0.15879358968811522 5.15152252840097 0.27221474926044736
lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 4.497089064309309 0.14597131995853999 5.926421871501725 0.2176824365945759
lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.8 2.3142308786104673 0.07941888150657982 3.2335440271464173 0.23200597458034938
lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.4 2.7703433835649864 0.09091172328870153 3.834652336045548 0.21352910437392492
lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.2 3.326070965684868 0.1544649328763298 4.511442461439798 0.2624380397678864
lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.1 3.881159631717355 0.172482026905275 5.167758112363737 0.2730124971074007
lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node.tr0.05 4.483928556003756 0.15276939219830676 5.925391060162343 0.26965490369673295
cv10-cyclo-ydesc-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node 4.785516662367433 0.5005810300543582 5.770037320245469 0.45749106900183006
cv10-cyclo-ydesc-noH-dft-rxnmapper-ns64-nv48-d48-l2-energy-diff-node 4.639682373463038 0.48664601899574567 5.680019656007882 0.4444534869454856
cv10-cyclo-ydesc-noH-dft-normal-ns64-nv48-d48-l2-energy-diff-node 5.067288908581696 0.27815954618853617 6.19541737721386 0.23286062553892575
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48 changes: 48 additions & 0 deletions submit-cv/lc-cyclo-inv-random-noH-dft-true.sbatch
Original file line number Diff line number Diff line change
@@ -0,0 +1,48 @@
#!/bin/bash -l
#SBATCH --partition=gpu
#SBATCH --nodes=1
#SBATCH --gpus-per-node=1
#SBATCH --cpus-per-task=1
#SBATCH --ntasks=1
#SBATCH --mem=8GB
#SBATCH --time=24:00:00
#SBATCH --job-name=equireact
#SBATCH --array=0-9
#SBATCH --exclude=i39

SEED=$(( $SLURM_ARRAY_TASK_ID + 123 ))

module purge
conda activate equireact
python -c 'import torch; print(torch.cuda.is_available())'
wandb enabled

python train.py \
--device cuda \
--experiment_name final-cv-80 \
--CV 1 \
--num_epochs 512 \
--seed ${SEED} \
--logdir /scratch/izar/briling/cv \
--dataset cyclo \
--train_frac 0.8 \
--combine_mode diff \
--distance_emb_dim 48 \
--dropout_p 0.1 \
--graph_mode energy \
--lr 0.001 \
--max_neighbors 50 \
--n_conv_layers 2 \
--n_s 64 \
--n_v 48 \
--radius 2.5 \
--sum_mode node \
--weight_decay 0.00001 \
--two_layers_atom_diff \
--atom_mapping \
--splitter random \
--noH \
--wandb_name lc-cv10-cyclo-inv-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node \
--invariant \
--learning_curve \

47 changes: 47 additions & 0 deletions submit-cv/lc-cyclo-random-noH-dft-true.sbatch
Original file line number Diff line number Diff line change
@@ -0,0 +1,47 @@
#!/bin/bash -l
#SBATCH --partition=gpu
#SBATCH --nodes=1
#SBATCH --gpus-per-node=1
#SBATCH --cpus-per-task=1
#SBATCH --ntasks=1
#SBATCH --mem=8GB
#SBATCH --time=24:00:00
#SBATCH --job-name=equireact
#SBATCH --array=0-9
#SBATCH --exclude=i39

SEED=$(( $SLURM_ARRAY_TASK_ID + 123 ))

module purge
conda activate equireact
python -c 'import torch; print(torch.cuda.is_available())'
wandb enabled

python train.py \
--device cuda \
--experiment_name final-cv-80 \
--CV 1 \
--num_epochs 512 \
--seed ${SEED} \
--logdir /scratch/izar/briling/cv \
--dataset cyclo \
--train_frac 0.8 \
--combine_mode diff \
--distance_emb_dim 48 \
--dropout_p 0.1 \
--graph_mode energy \
--lr 0.001 \
--max_neighbors 50 \
--n_conv_layers 2 \
--n_s 64 \
--n_v 48 \
--radius 2.5 \
--sum_mode node \
--weight_decay 0.00001 \
--two_layers_atom_diff \
--atom_mapping \
--splitter random \
--noH \
--wandb_name lc-cv10-cyclo-random-noH-dft-true-ns64-nv48-d48-l2-energy-diff-node \
--learning_curve \

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