NCI Raijin Build

Latest raijin LavaVu build 24/7/2019

module purge
module load gcc/5.2.0 python3/3.6.7 mesa/11.2.2

#Setup a virtualenv
cd ~
pip3 install --user virtualenv
.local/bin/virtualenv -p python3 python3-default

#Activate venv
source python3-default/bin/activate

pip install numpy

Install LavaVu from PyPi

LV_OSMESA=1 LV_LIB_DIRS=/apps/mesa/11.2.2/lib/ LV_INC_DIRS=/apps/mesa/11.2.2/include/ pip install lavavu

or build from github sources

git clone http://github.com/okaluza/LavaVu
cd LavaVu
export LV_LIB_DIRS=/apps/mesa/11.2.2/lib/
export LV_INC_DIRS=/apps/mesa/11.2.2/include/
make -j8 OSMESA=1

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Some tests, this mesa is using llvmpipe so volume rendering is usable

time lavavu/LavaVu test image
time lavavu/LavaVu -z1 voltest image

We can even run a notebook server and access from http://raijin.nci.org.au

export PYTHONPATH=${HOME}/LavaVu:$PYTHONPATH
cd ~/LavaVu

#Activate venv and run IPython
source python3-default/bin/activate
pip install jupyter

jupyter notebook --no-browser --ip 0.0.0.0

Copy port + token and go to http://raijin.nci.org.au:PORT/?token=TOKEN

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Tests with old underworld/2.5.0 module and new lavavu

LV_OSMESA=1 LV_LIB_DIRS=/apps/mesa/11.2.2/lib/ LV_INC_DIRS=/apps/mesa/11.2.2/include/ python setup.py install