Fix conversion of DICOM elements at multiple levels #134
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| name: Build | |
| on: push | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| container: ${{ matrix.container }} | |
| name: ${{ matrix.container || matrix.os }}/${{ matrix.packaging }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # WARNING: requires odil ≥ 0.12.2 | |
| # - { os: "ubuntu-latest", packaging: "apt", container: "debian:bullseye", python: "python3" } | |
| - { os: "ubuntu-latest", packaging: "apt", container: "debian:bookworm", python: "python3" } | |
| # - { os: "ubuntu-latest", packaging: "apt", container: "ubuntu:focal", python: "python3" } | |
| # - { os: "ubuntu-latest", packaging: "apt", container: "ubuntu:jammy", python: "python3" } | |
| # - { os: "ubuntu-latest", packaging: "apt", container: "ubuntu:noble", python: "python3" } | |
| - { os: "ubuntu-latest", packaging: "conda", python: "python" } | |
| - { os: "macos-latest", packaging: "conda", python: "python" } | |
| env: | |
| WORKSPACE: "${{ github.workspace }}" | |
| defaults: | |
| run: | |
| shell: ${{ contains(matrix.os, 'windows') && 'pwsh' || 'bash -l {0}' }} | |
| steps: | |
| - name: Provision (Debian, Ubuntu) | |
| # Install Python and Git. macOS workers already have this, however for | |
| # Linux we are running in minimal containers. | |
| run: | | |
| apt-get update | |
| DEBIAN_FRONTEND=noninteractive apt-get install -y git python3 | |
| if: ${{ contains(matrix.packaging, 'apt') }} | |
| - name: Provision (Micromamba) | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| init-shell: bash powershell | |
| environment-name: dicomifier | |
| create-args: python=3.11 | |
| if: ${{ contains(matrix.packaging, 'conda') }} | |
| - name: Checkout latest revision | |
| # Only the latest revision is required, as later steps do not depend on | |
| # tags. | |
| run: | | |
| git config --global init.defaultBranch master | |
| git config --global --add safe.directory '*' | |
| git init . | |
| git remote add origin ${{ github.server_url }}/${{ github.repository }} | |
| git fetch origin --depth=1 ${{ github.ref }} | |
| git checkout ${{ github.ref_name }} | |
| - name: Set-up (${{ matrix.packaging }}) | |
| run: | | |
| echo "Python interpreters" | |
| which -a ${{ matrix.python }} | |
| ${{ matrix.python }} .ci/build/${{ matrix.packaging }}.py | |
| - name: Build | |
| run: ${{ matrix.python }} ./.ci/build/build.py | |
| - name: Run tests | |
| run: ${{ matrix.python }} ./.ci/build/post_build.py |