bamsignals

R package to quickly obtain count vectors from indexed bam files.

Installation

Install the devtools package to be able to directly install R packages hosted on github :

install.packages("devtools")

To install bamsignals type:

devtools::install_github("lamortenera/bamsignals")

Alternatively, you can install it from Bioconductor (the two repos are synchronized):

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("bamsignals")