Fix attach kuzu in in-mem mode

[acquamarin]

Description

This PR fixes attaching kuzu database in in-memory mode, and add ci to run extension test in in-mem mode.

[github-actions]

Benchmark Result

Master commit hash: fca1bbd4a692cd8a04da34dac2c035e4e30ef93f
Branch commit hash: 5a921815d5794917c0a389d3ac72fc34d3d26968

Query Group	Query Name	Mean Time - Commit (ms)	Mean Time - Master (ms)	Diff
aggregation	q24	673.39	678.21	-4.83 (-0.71%)
aggregation	q28	10960.01	11350.44	-390.43 (-3.44%)
filter	q14	151.41	158.42	-7.01 (-4.42%)
filter	q15	156.10	160.68	-4.59 (-2.86%)
filter	q16	326.57	335.68	-9.11 (-2.71%)
filter	q17	472.57	480.71	-8.14 (-1.69%)
filter	q18	1939.50	1932.79	6.71 (0.35%)
fixed_size_expr_evaluator	q07	562.90	570.15	-7.25 (-1.27%)
fixed_size_expr_evaluator	q08	775.95	787.69	-11.73 (-1.49%)
fixed_size_expr_evaluator	q09	776.96	791.98	-15.01 (-1.90%)
fixed_size_expr_evaluator	q10	264.97	273.60	-8.63 (-3.15%)
fixed_size_expr_evaluator	q11	261.54	267.64	-6.10 (-2.28%)
fixed_size_expr_evaluator	q12	259.08	266.82	-7.74 (-2.90%)
fixed_size_expr_evaluator	q13	1502.22	1497.42	4.80 (0.32%)
fixed_size_seq_scan	q23	143.92	153.19	-9.27 (-6.05%)
join	q31	13.20	13.59	-0.38 (-2.81%)
ldbc_snb_ic	q35	749.76	872.48	-122.72 (-14.07%)
ldbc_snb_ic	q36	46.40	49.89	-3.50 (-7.01%)
ldbc_snb_is	q32	9.08	8.84	0.23 (2.63%)
ldbc_snb_is	q33	16.58	14.14	2.45 (17.29%)
ldbc_snb_is	q34	9.00	8.05	0.95 (11.86%)
multi-rel	multi-rel-large-scan	2876.02	2760.74	115.27 (4.18%)
multi-rel	multi-rel-lookup	43.48	64.01	-20.53 (-32.07%)
multi-rel	multi-rel-small-scan	53.95	46.49	7.46 (16.06%)
order_by	q25	153.57	165.97	-12.40 (-7.47%)
order_by	q26	486.07	487.90	-1.82 (-0.37%)
order_by	q27	1450.99	1439.60	11.39 (0.79%)
scan_after_filter	q01	198.59	206.26	-7.67 (-3.72%)
scan_after_filter	q02	187.45	196.00	-8.55 (-4.36%)
shortest_path_ldbc100	q39	76.34	74.80	1.54 (2.05%)
var_size_expr_evaluator	q03	2105.81	2113.44	-7.63 (-0.36%)
var_size_expr_evaluator	q04	2293.67	2296.10	-2.43 (-0.11%)
var_size_expr_evaluator	q05	2586.77	2728.74	-141.97 (-5.20%)
var_size_expr_evaluator	q06	1415.58	1397.48	18.11 (1.30%)
var_size_seq_scan	q19	1506.95	1496.17	10.78 (0.72%)
var_size_seq_scan	q20	3228.00	3311.94	-83.94 (-2.53%)
var_size_seq_scan	q21	2466.56	2505.24	-38.68 (-1.54%)
var_size_seq_scan	q22	135.22	136.57	-1.36 (-0.99%)

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 1 line in your changes missing coverage. Please review.

Project coverage is 84.09%. Comparing base (fca1bbd) to head (3b2d805).
Report is 3 commits behind head on master.

Files with missing lines	Patch %	Lines
src/main/attached_database.cpp	0.00%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #4177   +/-   ##
=======================================
  Coverage   84.09%   84.09%           
=======================================
  Files        1332     1332           
  Lines       53250    53251    +1     
  Branches     7428     7427    -1     
=======================================
+ Hits        44778    44782    +4     
+ Misses       8300     8297    -3     
  Partials      172      172           

☔ View full report in Codecov by Sentry.
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[github-actions]

Benchmark Result

Master commit hash: 7b50ae6f5d4209b8b50cc60173b95d626cb6e739
Branch commit hash: 5fa227e40e54b0b9f018210af5e710f61a0a1608

Query Group	Query Name	Mean Time - Commit (ms)	Mean Time - Master (ms)	Diff
aggregation	q24	672.80	679.24	-6.44 (-0.95%)
aggregation	q28	11064.64	11480.68	-416.03 (-3.62%)
filter	q14	151.67	158.92	-7.25 (-4.56%)
filter	q15	154.29	161.74	-7.45 (-4.61%)
filter	q16	329.96	334.53	-4.57 (-1.37%)
filter	q17	476.76	480.03	-3.28 (-0.68%)
filter	q18	1957.57	1942.58	14.98 (0.77%)
fixed_size_expr_evaluator	q07	562.43	572.97	-10.54 (-1.84%)
fixed_size_expr_evaluator	q08	770.91	780.19	-9.28 (-1.19%)
fixed_size_expr_evaluator	q09	773.14	783.39	-10.24 (-1.31%)
fixed_size_expr_evaluator	q10	266.06	274.49	-8.43 (-3.07%)
fixed_size_expr_evaluator	q11	260.00	268.97	-8.97 (-3.33%)
fixed_size_expr_evaluator	q12	259.51	266.20	-6.69 (-2.51%)
fixed_size_expr_evaluator	q13	1502.03	1492.33	9.71 (0.65%)
fixed_size_seq_scan	q23	139.79	153.56	-13.77 (-8.97%)
join	q31	13.31	12.82	0.48 (3.77%)
ldbc_snb_ic	q35	864.40	724.34	140.06 (19.34%)
ldbc_snb_ic	q36	46.18	55.56	-9.38 (-16.88%)
ldbc_snb_is	q32	8.46	9.69	-1.22 (-12.64%)
ldbc_snb_is	q33	15.76	18.77	-3.01 (-16.02%)
ldbc_snb_is	q34	8.06	8.91	-0.84 (-9.48%)
multi-rel	multi-rel-large-scan	2906.20	2795.35	110.85 (3.97%)
multi-rel	multi-rel-lookup	57.61	60.72	-3.11 (-5.13%)
multi-rel	multi-rel-small-scan	48.14	60.45	-12.31 (-20.37%)
order_by	q25	157.17	166.48	-9.31 (-5.59%)
order_by	q26	481.17	486.41	-5.24 (-1.08%)
order_by	q27	1445.26	1442.47	2.79 (0.19%)
scan_after_filter	q01	198.27	206.27	-8.01 (-3.88%)
scan_after_filter	q02	186.74	195.92	-9.19 (-4.69%)
shortest_path_ldbc100	q39	74.43	74.59	-0.16 (-0.21%)
var_size_expr_evaluator	q03	2103.49	2094.38	9.10 (0.43%)
var_size_expr_evaluator	q04	2265.39	2288.79	-23.40 (-1.02%)
var_size_expr_evaluator	q05	2604.91	2720.59	-115.69 (-4.25%)
var_size_expr_evaluator	q06	1416.25	1397.59	18.66 (1.33%)
var_size_seq_scan	q19	1504.36	1493.10	11.26 (0.75%)
var_size_seq_scan	q20	3250.16	3323.62	-73.45 (-2.21%)
var_size_seq_scan	q21	2453.20	2513.41	-60.21 (-2.40%)
var_size_seq_scan	q22	135.10	139.56	-4.45 (-3.19%)

[ray6080]

Can u also add extension test to codecov in mem run?

[acquamarin]

Can u also add extension test to codecov in mem run?

The extension tests need to recompile the gtest and test files so we can't run extension tests with main tests.

We should consider refactoring the testing framework so we don't have to recompile the testing framework when running extension tests.