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@kusterlab

Kuster Lab

The Kuster Lab comprises an international research team with a focus on proteomics, chemical biology and biomarker discovery

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  1. prosit prosit Public archive

    Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…

    Python 85 47

  2. SIMSI-Transfer SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    Python 2 3

Repositories

Showing 10 of 26 repositories
  • curve_curator Public

    Analysis platform for large-scale dose-dependent data

    kusterlab/curve_curator’s past year of commit activity
    Python 18 Apache-2.0 3 2 0 Updated Nov 5, 2024
  • ProSIMSIt Public
    kusterlab/ProSIMSIt’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 4, 2024
  • picked_group_fdr Public

    Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments

    kusterlab/picked_group_fdr’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 5 5 0 Updated Nov 4, 2024
  • biowc-pathwaygraph Public

    Interactive Visualization of Signaling Pathways

    kusterlab/biowc-pathwaygraph’s past year of commit activity
    TypeScript 2 Apache-2.0 0 0 0 Updated Nov 3, 2024
  • SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    kusterlab/SIMSI-Transfer’s past year of commit activity
    Python 2 Apache-2.0 3 7 0 Updated Oct 22, 2024
  • psite_annotation Public

    Python module for annotating a pandas dataframe with phosphosites, e.g. PhosphoSitePlus annotations, kinase-substrate relations, domain information, etc.

    kusterlab/psite_annotation’s past year of commit activity
    Python 4 Apache-2.0 0 1 0 Updated Sep 23, 2024
  • Gem_synergy Public

    Code to analyze and plot data from S. Hoefer et al. 2024.

    kusterlab/Gem_synergy’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Sep 18, 2024
  • enrichment-server Public
    kusterlab/enrichment-server’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Sep 17, 2024
  • TIC_Normalization Public

    R script and exemplary input and output files for the TIC normalization approach.

    kusterlab/TIC_Normalization’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Aug 22, 2024
  • use_embedded Public
    kusterlab/use_embedded’s past year of commit activity
    Go 0 1 0 0 Updated Jul 10, 2024
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