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@kschan0214 kschan0214 released this 25 Feb 09:30
· 183 commits to master since this release
0.8.0
b4255d8

GUI related

  • New layout for input/output panel for data selection
  • New pipeline configuration file (sepia_config.m), log file (run_sepia.log) and error message file (run_sepia.error)
  • New feature to load parameters in a pipeline configuration file (sepia_config.m) to the GUI
  • New option to save unwrapped echo phase
  • New option to exlcude unreliable voxels
  • New option to select reference tissue for QSM normalisation/referencing
  • New option to remove residual B1 field in local field using spherical harmonic function with adjustable order of the fitting

Toolbox related

  • Support the lastest version of MEDI toolbox (Jan 15, 2020)
  • Support extra brain extraction (FSL's BET) parameters from MEDI toolbox
  • New 'percentage' option for MEDI+0 algorithm
  • Support the lastest version of FANSI toolbox (commit dc68c306)
  • New option to use weak harmonic regularisation <https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.27483)>_ with FANSI

Backend related (advanced user)

  • Support developers adding a third-party method as an addon
  • Introduce tutorial scripts to guide developers on how to adding third-party method in SEPIA
  • Introduce functions to simplify the workflow of creating new method panel
  • The order of removal of residual B1 field and mask erosion is interchanged to produce better a fitting result

Bug fix

  • Bug fix: running SEPIA without parrallel computing toolbox
  • Bug fix: running MEDI toolbox nonlinear fit echo phase combination with 2 echoes
  • Bug fix: running MEDI method in SEPIA
  • Bug fix: running single echo data with exclusion of unreliable voxels option enabled

Please update the MEDI toolbox (Jan 15, 2020) and FANSI toolbox (commit dc68c306) to the lastest version for the best performance.

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