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A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

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kr-colab/msUtils

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5 Commits
AFSDistFromSite.py
AFSDistFromSite.py
 
 
LICENSE
LICENSE
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
bitStuff.c
bitStuff.c
 
 
bitStuff.h
bitStuff.h
 
 
combineMSFileDir.py
combineMSFileDir.py
 
 
combineMSFileSubsets.py
combineMSFileSubsets.py
 
 
discoal_mig2hmm.c
discoal_mig2hmm.c
 
 
getMSRandomSubset.py
getMSRandomSubset.py
 
 
getMSRepSubrange.py
getMSRepSubrange.py
 
 
infiniteSitesToFinite.py
infiniteSitesToFinite.py
 
 
maskedStats.c
maskedStats.c
 
 
maskedStatsSubpop.c
maskedStatsSubpop.c
 
 
ms2RSquareByDistance.c
ms2RSquareByDistance.c
 
 
ms2SFS2D.c
ms2SFS2D.c
 
 
ms2SFS2D_discoal.c
ms2SFS2D_discoal.c
 
 
ms2SFSVector.c
ms2SFSVector.c
 
 
ms2SFSVectorWindow.c
ms2SFSVectorWindow.c
 
 
ms2TwoSite.c
ms2TwoSite.c
 
 
ms2TwoSite2Popn.c
ms2TwoSite2Popn.c
 
 
msGeneralStats.c
msGeneralStats.c
 
 
msGeneralStats.h
msGeneralStats.h
 
 
msHKA.c
msHKA.c
 
 
msMask.c
msMask.c
 
 
msMask.h
msMask.h
 
 
msMaskAllRows.c
msMaskAllRows.c
 
 
msParams.c
msParams.c
 
 
msParamsSubpop.c
msParamsSubpop.c
 
 
msParamsSubpopNoAd.c
msParamsSubpopNoAd.c
 
 
msParamsSubpopTrans.c
msParamsSubpopTrans.c
 
 
msParamsTest.c
msParamsTest.c
 
 
msSample.py
msSample.py
 
 
msSlidingWindow.rb
msSlidingWindow.rb
 
 
msTools.py
msTools.py
 
 
niceStats.c
niceStats.c
 
 
niceStats4Gamete.c
niceStats4Gamete.c
 
 
niceStatsAchazSystem.c
niceStatsAchazSystem.c
 
 
niceStatsDan.c
niceStatsDan.c
 
 
niceStatsNoOmega.c
niceStatsNoOmega.c
 
 
niceStatsSFSRegular.c
niceStatsSFSRegular.c
 
 
niceStatsShanku.c
niceStatsShanku.c
 
 
onePopnStats_forGhostIntroML.c
onePopnStats_forGhostIntroML.c
 
 
pairDist.c
pairDist.c
 
 
pairwiseDists.c
pairwiseDists.c
 
 
pairwiseIBSTracts.c
pairwiseIBSTracts.c
 
 
removeNedOutColumnsFromMsFile.py
removeNedOutColumnsFromMsFile.py
 
 
slideFST.c
slideFST.c
 
 
splitMsOutputIntoWindows.py
splitMsOutputIntoWindows.py
 
 
test.bed
test.bed
 
 
testBits.c
testBits.c
 
 
testMask
testMask
 
 
testMask2
testMask2
 
 
testMasks
testMasks
 
 
twoPopnNiceStats.c
twoPopnNiceStats.c
 
 
twoPopnStats_forML.c
twoPopnStats_forML.c
 
 
twoSite2SFS.py
twoSite2SFS.py
 
 

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msUtils

A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

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A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

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