v0.4.2

0.4.2 (2025-01-07)

Bug Fixes

• swapped barcode output files (a851ad2)

v0.4.1

0.4.1 (2025-01-06)

Bug Fixes

• update configs to 0.4 (bd79b6b)

v0.4.0

0.4.0 (2025-01-02)

⚠ BREAKING CHANGES

• Major version change because of changes in config that are not backward compatible.

Features

• Add performance tweaks for resource optimization in workflow rules (5ed1ef9)
• Allowing also only FW reads with a UMI (56b2254)
• Strand sensitive option (f315aab)
• One DNA or RNA count file across multiple replicates (ccbacee)

MPRAsnakeflow: v0.3.1

0.3.1 (2024-12-17)

Bug Fixes

• experiment countplots (#149) (d2be468)

MPRAsnakeflow: v0.3.0

0.3.0 (2024-11-20)

⚠ BREAKING CHANGES

• versioned config (#140)

Features

• versioned config (#140) (9573b66)
• MAD outlier removal is completely removed (#140) (9573b66)
• default is NO outlier detection (none is not present anymore) (#140) (9573b66)
• global config is removed. splits moved now withing mapping in assignment (#140) (9573b66)

MPRAsnakeflow: v0.2.0

0.2.0 (2024-11-05)

⚠ BREAKING CHANGES

• Support only snakemake >=8.24.1 (#130)
• File output formats and locations changed
• Normalization changed which may result in different outputs

Features

• outlier removal methods (#132)
• No min max length for bbmap. default mapq is 30. (#131)
• IGVF outputs (#129)
• Documentation improvements

MPRAsnakeflow v0.1.1

0.1.1 (2024-09-30)

Bug Fixes

• Detach from anaconda (#122) (16bcea2)
• memory resources for bbmap (#123) (af93f58)

Full Changelog: v0.1.0...v0.1.1

MPRAsnakeflow v0.1.0

0.1.0 (2024-09-18)

First release of MPRAsnakeflow!

Feature highlights

• Multiple assignment mapping strategies (BBMap, exact, bwa)
• Optimized assignment for variants with BBMap
• QC report for assignment and experiment workflow
• Barcode count output
• Snakemake 8 support
• Extended documentation: https://mprasnakeflow.readthedocs.io