AD-2723: Improve Mapping Completeness #48
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…is no longer used to submit c2m2 data packages.
…m-Mapping AD-2726: Improves Assay Type Term Mappings
Remove reference to the old submission tool and point towards the new submission page. Fix error in bash code for running the KF to C2M2 pipeline script.
Fix misspelling
* Update `ds_table_constants.tsv` to add `biofluid` field placeholder * Update `fhir_table_constants.tsv` to add `biofluid` placeholder field to FHIR constants.
* Adds new mappings for previously unmapped data type terms. * Adds mappings for synonymous (duplicative) data type terms, specifically those that exist in the Kids First database in both singular and plural forms. * Removes unused mapping. * Sorts all mappings alphabetically. Mapping input provided also by @calkinsh and @HuangXiaoyan0106
* AD-2736 Misc metrics file formats mappings * AD-2730 `.cns` file format mapping * AD-2734 `.ndjson` file format mapping * AD-2735 `.ped` file format mapping * AD-2731 `.seg` file format mapping * AD-2733 `.selfSM` file format mapping * AD-2732 `.table` file format mapping * AD-2728 `.tbi` file format mapping
Set python version to 3.9
AD-3165: Update Project Dependencies
…ncies AD-3165: Update Project Dependencies
calkinsh
approved these changes
Jan 13, 2025
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biofluidfield placeholderREADME.mdto revise documentationsetup_env.shprepare_c2m2_submission.sh