Fix indexing files in sub-folders on the Desktop app

- `fs.readdir' func in node version 18.18.2 has buggy `recursive' option
  See nodejs/node#48640, Effect-TS/effect#1801 for details

- We were recursing down a folder in two ways on the Desktop app.
  Remove `recursive: True' option to the `fs.readdirSync' method call
  to recurse down via app code only

src/interface/desktop/main.js

@@ -121,17 +121,17 @@ async function isPlainTextFile(filePath) {
 }
 
 async function processDirectory(filesToPush, folder) {
-    const files = fs.readdirSync(folder.path, { withFileTypes: true, recursive: true });
+    const files = fs.readdirSync(folder.path, { withFileTypes: true });
 
     for (const file of files) {
-        const filePath = path.join(folder.path, file.name);
+        const filePath = path.join(file.path, file.name || '');
         if (file.isFile() && await isPlainTextFile(filePath)) {
-            console.log(`Add ${file.name} in ${folder.path} for indexing`);
+            console.log(`Add ${file.name} in ${file.path} for indexing`);
             filesToPush.push(filePath);
         }
 
         if (file.isDirectory()) {
-            await processDirectory(filesToPush, {'path': path.join(folder.path, file.name)});
+            await processDirectory(filesToPush, {'path': filePath});
         }
     }
 }
@@ -497,11 +497,11 @@ app.whenReady().then(() => {
         try {
             const result = await todesktop.autoUpdater.checkForUpdates();
             if (result.updateInfo) {
-              console.log("Update found:", result.updateInfo.version);
+              console.log("Desktop app update found:", result.updateInfo.version);
               todesktop.autoUpdater.restartAndInstall();
             }
           } catch (e) {
-            console.log("Update check failed:", e);
+            console.warn("Desktop app update check failed:", e);
         }
     })
 

src/interface/desktop/package.json

@@ -20,7 +20,6 @@
     "axios": "^1.6.4",
     "cron": "^2.4.3",
     "electron-store": "^8.1.0",
-    "fs": "^0.0.1-security",
     "file-type": "^16.2.0"
   }
 }

src/interface/desktop/yarn.lock

@@ -536,11 +536,6 @@ fs.realpath@^1.0.0:
   resolved "https://registry.yarnpkg.com/fs.realpath/-/fs.realpath-1.0.0.tgz#1504ad2523158caa40db4a2787cb01411994ea4f"
   integrity sha512-OO0pH2lK6a0hZnAdau5ItzHPI6pUlvI7jMVnxUQRtw4owF2wk8lOSabtGDCTP4Ggrg2MbGnWO9X8K1t4+fGMDw==
 
-fs@^0.0.1-security:
-  version "0.0.1-security"
-  resolved "https://registry.yarnpkg.com/fs/-/fs-0.0.1-security.tgz#8a7bd37186b6dddf3813f23858b57ecaaf5e41d4"
-  integrity sha512-3XY9e1pP0CVEUCdj5BmfIZxRBTSDycnbqhIOGec9QYtmVH2fbLpj86CFWkrNOkt/Fvty4KZG5lTglL9j/gJ87w==
-
 function-bind@^1.1.1:
   version "1.1.1"
   resolved "https://registry.yarnpkg.com/function-bind/-/function-bind-1.1.1.tgz#a56899d3ea3c9bab874bb9773b7c5ede92f4895d"