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10x.xml(45): expected = #98

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bony45 opened this issue Dec 23, 2019 · 1 comment
Open

10x.xml(45): expected = #98

bony45 opened this issue Dec 23, 2019 · 1 comment
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@bony45
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bony45 commented Dec 23, 2019

I was trying to run Dropest first time for my 10X data as follow
dropest -V -F -g /lower_bay/home/bony.dekumar/refdata-cellranger-mm10-3.0.0/genes/genes.gtf -c 10x.xml possorted_genome_bam.bam

i also tried running
dropest -V -F -m -g /lower_bay/home/bony.dekumar/refdata-cellranger-mm10-3.0.0/genes/genes.gtf -c 10x.xml possorted_genome_bam.bam

or

I got the following error, I am new to single-cell data analysis.

Version: 0.8.6.
Run: 12/23/2019 10:38:52.
10x.xml(45): expected =

Thanks for the help.

@evanbiederstedt
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There's some error in the file 10x.xml. I would have to see it to debug.

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