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R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
JavaScript 223 47
R package for the joint analysis of multiple single-cell RNA-seq datasets
R 205 40
Haplotype-aware CNV analysis from single-cell RNA-seq
R 180 23
Bayesian Segmentation of Spatial Transcriptomics Data
Julia 168 34
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
C++ 91 42
Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
R 57 3
Core utilities for single-cell RNA-seq
The repository with the code and analysis for the paper [Erickson et al]
Single-cell Case Control Analysis
Implements the Leiden algorithm via an R interface
Evaluating and correcting cell admixtures in imaging-based spatial transcriptomics data
Repository for the scLiTr (single-cell Lineage Tracing analysis) python package
Optimization of gene panels for targeted spatial transcriptomics
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