importFrom for %dopar%; update docs

NAMESPACE

@@ -27,6 +27,7 @@ export(is_key_error)
 export(is_scalar)
 export(is_slice)
 export(obj_list)
+export(pizzarr_option_defaults)
 export(pizzarr_sample)
 export(slice)
 export(zarr_create)
@@ -39,10 +40,4 @@ export(zarr_open_array)
 export(zarr_open_group)
 export(zarr_save_array)
 export(zb_slice)
-importFrom(R6,R6Class)
-importFrom(memoise,memoise)
-importFrom(memoise,timeout)
-importFrom(qs,lz4_compress_raw)
-importFrom(qs,lz4_decompress_raw)
-importFrom(qs,zstd_compress_raw)
-importFrom(qs,zstd_decompress_raw)
+importFrom(foreach,"%dopar%")

R/numcodecs.R

@@ -36,7 +36,6 @@ Codec <- R6::R6Class("Codec",
 #' ZSTD compressor for Zarr
 #' @title ZstdCodec Class
 #' @docType class
-#' @importFrom qs zstd_compress_raw zstd_decompress_raw
 #' @description
 #' Class representing a ZSTD compressor
 
@@ -62,7 +61,7 @@ ZstdCodec <- R6::R6Class("ZstdCodec",
     #' @return Compressed data.
     encode = function(buf, zarr_arr) {
       # Reference: https://github.com/traversc/qs/blob/84e30f4/R/RcppExports.R#L16
-      result <- zstd_compress_raw(buf, self$level)
+      result <- qs::zstd_compress_raw(buf, self$level)
       return(result)
     },
     #' @description
@@ -71,7 +70,7 @@ ZstdCodec <- R6::R6Class("ZstdCodec",
     #' @param zarr_arr The ZarrArray instance.
     #' @return Un-compressed data.
     decode = function(buf, zarr_arr) {
-      result <- zstd_decompress_raw(buf)
+      result <- qs::zstd_decompress_raw(buf)
       return(result)
     },
     #' @description
@@ -89,7 +88,6 @@ ZstdCodec <- R6::R6Class("ZstdCodec",
 #' LZ4 compressor for Zarr
 #' @title Lz4Codec Class
 #' @docType class
-#' @importFrom qs lz4_compress_raw lz4_decompress_raw
 #' @description
 #' Class representing a LZ4 compressor
 #'
@@ -115,7 +113,7 @@ Lz4Codec <- R6::R6Class("Lz4Codec",
      #' @return Compressed data.
      encode = function(buf, zarr_arr) {
        # Reference: https://github.com/traversc/qs/blob/84e30f4/R/RcppExports.R#L24
-       body <- lz4_compress_raw(buf, self$acceleration)
+       body <- qs::lz4_compress_raw(buf, self$acceleration)
 
        # The compressed output includes a 4-byte header storing the original size
        # of the decompressed data as a little-endian 32-bit integer.
@@ -135,7 +133,7 @@ Lz4Codec <- R6::R6Class("Lz4Codec",
      decode = function(buf, zarr_arr) {
       body <- buf[5:length(buf)]
 
-      result <- lz4_decompress_raw(body)
+      result <- qs::lz4_decompress_raw(body)
       return(result)
      },
      #' @description

R/options.R

@@ -1,16 +1,14 @@
 # Adapted from https://github.com/IRkernel/IRkernel/blob/master/R/options.r
 
-#' @usage
 #' pizzarr_option_defaults
-#' 
-#' @rdname pizzarr-package
 #' @export
 pizzarr_option_defaults <- list(
     pizzarr.http_store_cache_time_seconds = 3600,
     pizzarr.parallel_read_enabled = FALSE,
     pizzarr.parallel_write_enabled = FALSE
 )
 
+#' @keywords internal
 from_env <- list(
     PIZZARR_HTTP_STORE_CACHE_TIME_SECONDS = as.integer,
     PIZZARR_PARALLEL_READ_ENABLED = as.logical,

R/stores.R

@@ -346,7 +346,6 @@ MemoryStore <- R6::R6Class("MemoryStore",
 #' HttpStore for Zarr
 #' @title HttpStore Class
 #' @docType class
-#' @importFrom memoise memoise timeout
 #' @description
 #' Store class that uses HTTP requests.
 #' Read-only. Depends on the `crul` package.

R/zarr-array.R

@@ -3,7 +3,7 @@
 #' The Zarr Array class.
 #' @title ZarrArray Class
 #' @docType class
-#' @importFrom R6 R6Class
+#' @importFrom foreach %dopar%
 #' @description
 #' Instantiate an array from an initialized store.
 #' @param selection Selections are lists containing either scalars, strings, or Slice objects. Two character