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Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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kapsakcj/README.md

Hi there 👋

Hi! I'm Curtis. I'm a bioinformatician working with Theiagen Genomics. I'm a fan of microbial genomics 🦠, reproducible bioinformatics methods ♻️, and DNA sequencing 🧬!

  • 🌱 I’m currently learning Python, WDL, Nextflow, and Continuous Integration techniques
  • 👯 I’m looking to collaborate on developing dockerfiles to make installation and usage of bioinformatics tools easier! See here
  • 💬 Ask me about - Microbial & viral genomes, plasmids, software containers
  • 📫 How to reach me - LinkedIn and email kapsakcj (at) gmail (dot) com,
  • 😄 Pronouns - He/Him

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  1. StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 204 128

  2. theiagen/public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 49 19

  3. theiagen/public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  4. theiagen/public_health_bacterial_genomics Public

    WDL 26 14

  5. win10-linux-conda-how-to Public

    A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.

    40 9

  6. nanoporeWorkflow Public

    🧬 Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers

    Shell 9 4

398 contributions in the last year

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Activity overview

Contributed to theiagen/public_health_bioinformatics, StaPH-B/docker-builds, theiagen/mercury and 41 other repositories
Loading A graph representing kapsakcj's contributions from April 07, 2024 to April 07, 2025. The contributions are 46% commits, 20% code review, 20% issues, 14% pull requests.

Contribution activity

April 2025

Created 3 commits in 1 repository

Created a pull request in StaPH-B/docker-builds that received 4 comments

adds pangolin w/ pangolin-data 1.33

Adds a dockerfile and readme for the latest pangolin-data 1.33 database. NOTE: the pangolin-data release is named "pangolin-data v1.33" which corre…

+180 −1 lines changed • 4 comments
Opened 1 issue in 1 repository
gambit-suite/gambitdb 1 open
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