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1. TIP4P-Water-Model TIP4P-Water-Model Public

   The repository contains scripts and results of molecular dynamics simulations comparing different water models (including TIP4P, TIP4P/Ice) for structural, dynamic and thermodynamic properties. It …

   Python

2. Molecular-Dynamics-Simulator Molecular-Dynamics-Simulator Public

   A 2D molecular dynamics simulator that models atomic interactions using Lennard-Jones forces on a Boltzmann lattice. Currently implements an all-pairs algorithm for force calculations with visualiz…

   C++

3. DNA-Assembly-Problem-Solver DNA-Assembly-Problem-Solver Public

   Advanced DNA sequence reconstruction tool using genetic algorithms and metaheuristics. Implements SBH problem solver with adaptive crossover operators and comprehensive error handling.

   C++

4. DNA-Motif-Tabu-Search DNA-Motif-Tabu-Search Public

   Zaawansowana implementacja algorytmu wykrywania motywów DNA wykorzystująca metaheurystykę Tabu Search. Projekt oferuje zarówno deterministyczne, jak i probabilistyczne podejście do problemu, wraz z…

   C++

5. DNA-Partial-Digest-Problem DNA-Partial-Digest-Problem Public

   PDP polega na odtworzeniu rozmieszczenia miejsc restrykcyjnych na cząsteczce DNA, korzystając z wielokrotnych pomiarów fragmentów uzyskanych w wyniku częściowego trawienia enzymatycznego. algorytmy…

   C++

6. RNA-Seq-Nextflow RNA-Seq-Nextflow Public

   A reproducible, scalable, and containerized RNA-Seq analysis pipeline implemented in Nextflow. Features modular design with quality control (FastQC/MultiQC), alignment (STAR/HISAT2), quantification…

   HTML