0.1.2 (2024-10-02)
0.1.1 (2024-10-02)
- fix issue with empty env var (d0c6b9f)
- minor fixes to builders (020f163)
- remove old contributors list (1df23e5)
- adapt sample scripts for parallel testing (f5f5f75)
- add apply mask operation (a8e72b3)
- add apply warp operation (9364c01)
- add B option to segmentation (a4e4e60)
- add bandpass filtering operation (2f045d7)
- add binarize and invert operation (f9c2843)
- add bins, dof, refvol and scaling options (7d8f27e), closes #6
- add compute mean volume operation (b1524fc)
- add concatenate matrices operation (9d1739f)
- add cost and smooth options (1e92716), closes #4
- add create segmentation operation (ee04e29)
- add create tissue type masks operation (f6e725a)
- add crop operation (a5cca25)
- add denoise operation and helper (9683ea5)
- add detrend operation (e83434e)
- add dilate operation (02a8085)
- add erode operation (7a15de4)
- add execution classes to provide execution metadata (ab5b984)
- add extract brain with bet operation (c73dcfe)
- add extract rois operation (7ec35de)
- add fill brain mask operation (897cdf5)
- add fill mask with fslmaths operation (511e5ff)
- add flirt operation (48d28eb)
- add flirt operation (c94879f)
- add fnirt operation (6fd3bb9)
- add fsl anat operation (c956469)
- add full script (03fcbf2)
- add hd-bet operation (51228c0)
- add image type to segmentation (dfe42f6)
- add invert binary mask operation (e9639e5)
- add invert transformation matrix operation (ab24fd6)
- add invert warp operation (87c530b)
- add motion correction operation (cf87735)
- add motion outlier detection operation (f2723da)
- add multiply images with fslmaths operation (3accde3)
- add multiply operation (12f4e94)
- add n option to create segmentation (77e4e88)
- add normalize intensity operation (cc96015)
- add operation to binarize an image (5bf603e)
- add pca operation (82e78e0)
- add pipeline, sequence, and step classes (30413c4)
- add regress out pca operation (a3611d4)
- add regression operation (c674bfd)
- add rel, abs, and jacobian params (3e67252), closes #2
- add reorienting to standard operation (0e207bb)
- add sample builders (a0e4d01)
- add sample register parcellation pipeline (0eecf76)
- add separate function to call system (a34874b)
- add slice timing correction operation (7fecb62)
- add std dev outlier detection operation (2988ef0)
- add subtract volume operation (e61fba2)
- add support for bbr in flirt (ecb40e3)
- add test for createsegmentation operation (98aa28a), closes #12
- add test for extractbrain operation (b9d7bf4), closes #14
- add test for hdbet operation (af1d1d3), closes #16
- add test for peformnonlinearimagereg op (f3ffbb4), closes #20
- add test for performlinearimageregistration (d305bac), closes #18
- add test for processanatomicalimage (60282b7), closes #22
- add test function for AddVolumes operation (5aeeb14), closes #10
- add threshold clusters operation (203a9ef)
- add threshold image operation (243ef6a)
- allow optional steps and clobbering (9324fc1)
- allow to set starting step (27ae413)
- allow users to skip steps (60ae297)
- bootstrap sample functional connectivity pipe (21a498b)
- create add volumes operation (9bbce82)
- create sample configuration builder (4fb20c6)
- merge params into config (bf33a5e)
- provide sample function to prepare environment (024cab5)
- save image of connectome in extract rois (8796fdc)
- save pipeline execution files (eea16c3)
- split register parcellation into two pipelines (2afb919)
- start work on the segmentation pipeline (0c281e7)
- support configuration files (b57919e)
- update functional connectivity script (18ef73a)
- abort when too many outliers are present (4d9a648)
- add configs to command in correct format (11ba9c7)
- add file ext for transform parcellation pipes (fe2547d)
- allow out to be optional for segmentation (72b579d)
- change todo to lowercase (21a0c21)
- differentiate between operation and step config (df13c86)
- fix bug applying mask (f5ab611)
- fix bug in example pipeline (3b3bf18)
- fix issue with tissue type order (1b0fcea)
- fix issues with basic operations (0afbb4b)
- fix missing outputs in sequence (7077645)
- fix overriding of default sequence config (3533178)
- fix parameter name (6c7b2a1)
- fix register to standard script (460723f)
- fix sample segmentation sequence (6e9298d)
- fix sample sequence and pipeline (ced934d)
- fix segmentation output path (04332f7)
- fix segmentation script (59baa5a)
- fix transform parcellation config (743a193)
- fix typo in erosions (22e7ca0)
- fix typo in register to standard sequence (5c29706)
- fix utils (3f4a85b)
- fix verbose issue and add options (108ba4f)
- fix verbose issue in extract brain operation (2675989)
- matlab smart indent (974e330)
- not passing in default values in default test (9831854), closes #44
- provide a default value for optional (c744960)
- remove deprecated parameter (a3ffee8)
- remove unnecessary if statement to allow for n=0 (c63937d)
- styling issues (419538f)
- styling issues (f78fae1)
- styling issues (c29f63c)
- styling issues (e92c00d), closes #10
- try matlab smart indent (6c70b3d)
- update brain extraction method (5d80ff8)
- update fill mask as fill holes (3369db0)
- update operations (1603fcf)
- update sample sequences and pipelines (252282f)
- update sequences using multiply operation (0c7840c)
- use correct formatting operator (75212df), closes #32