Version 0.5
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The null statistical model was changed to the log-normal distribution. This was determined to be a more appropriate choice than other distributions (including the previously used exponential) from examining ChIP-seq control samples.
-
The minimum length (
-l
) is now a regular peak-calling parameter, not an alternative peak-calling method. The default value is 0bp. Those who prefer peak-calling by minimum length and not AUC can run-a 0 -l <int>
. -
Two convenience options were added:
-X
: option to skip peak-calling, but perform all alignment parsing (including identifying PCR duplicates)-P
: option to call peaks directly from a bedgraph-ish log file (-f
) produced by a previous Genrich run