fishtree 0.3.4

• This release fixes some tests, and has no new user-facing features.

fishtree 0.3.3

• The internal .get() function now avoids a build-time dependency on memoise::memoise(), per r-lib/memoise#76

• Vignettes and citations have been updated to use the latest versions, where relevant.

fishtree 0.3.2

• fishtree_alignment() now works correctly with species = ... arguments.

• The internal .name_check function now emits structured warning output.
  This means that users supplying species names to e.g., fishtree_phylogeny
  that do not have matches in the taxonomy may use functions that capture
  warning messages to programatically determine which species are missing,
  without parsing error messages.

• Converted some warnings to messages.

• Minor documentation changes.

fishtree 0.3.1

• fishtree_tip_rates now warns on missing / invalid species.

fishtree 0.3.0

• New function: fishtree_complete_phylogeny, gets complete phylogenies
  where unsampled taxa were placed using stochastic polytomy resolution.

• Use package memoise instead of rolling our own caching functionality.

• New global option fishtree.quiet: when set to FALSE, be more verbose
  during downloads (can help with debugging issues).

• Some internal reorganization

fishtree 0.2.0

• New function: fishtree_rogues, identifies rogue/intruder taxa that break
  the monophyly of a selected group.

• fishtree_phylogeny now permits downloads of MRCA trees for paraphyletic
  groups. Suggested by an anonymous reviewer.

• fishtree_taxonomy revamped. It now takes a single argument ranks = ...
  where you can retrieve taxonomic information for any valid taxonomic rank
  in our taxonomy. Calling it without arguments returns a data frame of all
  valid taxa names. Suggested by an anonymous reviewer.

v0.1.0

Initial release.