Skip to content
View joewandy's full-sized avatar
61 followers · 43 following

Achievements

Achievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Organizations

@glasgowcompbio

Block or report joewandy

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
joewandy/README.md

Hi 👋 I'm Joe.

I work on applying machine learning in computational biology domain, mostly in metabolomics and multi-omics data analysis.

All my work are available on this GitHub. I also published in computational biology and bioinformatics journals journals, as well as presenting in workshops and conferences. I don't do as much of that anymore in the industry, so most of my open-source works can be found in this GitHub profile.

I’m currently working on :

Other past projects that you may find interesting:

  • Developing novel fragmentation strategies in metabolomics via ViMMS and ViMMS-gym.
  • Bayesian adaptive clinical trial design via pyBasket.

📫 How to reach me: joewandy@gmail.com, or via twitter.

Pinned Loading

  1. glasgowcompbio/pySubstructures glasgowcompbio/pySubstructures Public

    A Python package to perform unsupervised discoveries of motifs from tandem mass spectrometry data.

    Jupyter Notebook 1

  2. glasgowcompbio/pyMultiOmics glasgowcompbio/pyMultiOmics Public

    Python toolbox for multi-omics data mapping and analysis

    Jupyter Notebook 19 5

  3. glasgowcompbio/vimms glasgowcompbio/vimms Public

    A programmable and modular LC/MS simulator in Python

    Python 19 6

  4. glasgowcompbio/ms2ldaviz glasgowcompbio/ms2ldaviz Public

    Substructural discovery in untargeted metabolomics data using LDA topic modelling.

    Jupyter Notebook 11 8

  5. glasgowcompbio/GraphOmics glasgowcompbio/GraphOmics Public

    Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.

    Jupyter Notebook 12 2

  6. glasgowcompbio/PALS glasgowcompbio/PALS Public

    Ranking metabolite (and other omics sets) by their activity levels via SVD

    Jupyter Notebook 2 1