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TBProfiler v5.0.0
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@jodyphelan jodyphelan released this 10 Aug 14:02
· 189 commits to master since this release
v5.0.0
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Changes

  • Phylogenetic functionality with usher and iqtree
  • Added hard and soft filtering for variants
  • Use sqlite3 db to store snp difference from reference
  • Remove PDF support
  • Possibility to use user-defined python function to update results (e.g. can be used to fix mmpL5/mmpR5 homoplasy)
  • Added tb-profiler-tools script which will be used to add functions that are not core to tb-profiler
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