Minor fixes

.gitignore

@@ -0,0 +1,143 @@
+# Project-specific
+*.code-workspace
+.noseids
+.vscode/*
+data/*
+results/*
+*.csv
+*.xlsx
+*.env.*
+!*.env.example
+.DS_Store
+notebooks/*
+docs/source/_build/*
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

.travis.yml

@@ -27,14 +27,14 @@ jobs:
       tag_name: "$RELEASE_VERSION"
       cleanup: false
       prerelease: true
-      token:
-        secure: 
+      api_key:
+        secure: "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"
       file:
       - dist/*.tar.gz
       file_glob: true
       on:
         branch: master
-        repo: jmyrberg/mknapsack
+        repo: jmyrberg/aakr
     after_success:
     - git push --tags
   - stage: deploy
@@ -43,11 +43,11 @@ jobs:
     python: '3.8'
     deploy:
       provider: pypi
-      username: jmyrberg
+      username: __token__
       distributions: sdist
       cleanup: false
       password:
-        secure: 
+        secure: "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"
       on:
         branch: master
         repo: jmyrberg/aakr

VERSION

@@ -1 +1 @@
-0.0.1dev0
+0.0.1dev1

aakr/__init__.py

@@ -1,4 +1,3 @@
 from ._aakr import AAKR
-from ._version import __version__
 
-__all__ = ['AAKR', '__version__']
+__all__ = ['AAKR']

aakr/_aakr.py

@@ -4,7 +4,7 @@
 import numpy as np
 
 from sklearn.base import BaseEstimator, TransformerMixin
-from sklearn.metrics.pairwise import pairwise_distances, pairwise_kernels
+from sklearn.metrics.pairwise import pairwise_distances
 from sklearn.utils.validation import check_array, check_is_fitted
 
 

requirements-dev.txt

@@ -1 +1,2 @@
-pytest>=5.4.2
+pytest>=5.4.2
+twine==3.2.0