Updated docs [skip ci]

jdetle · May 3, 2016 · 9142426 · 9142426
1 parent 2bea8be
commit 9142426
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/package/MDAnalysis/analysis/hbonds/hbond_analysis.py b/package/MDAnalysis/analysis/hbonds/hbond_analysis.py
@@ -215,9 +215,8 @@ class HydrogenBondAnalysis_OtherFF(HydrogenBondAnalysis):
 
   import MDAnalysis
   import MDAnalysis.analysis.hbonds
-  from MDAnalysisTests.datafiles import PSF, DCD
 
-  u = MDAnalysis.Universe(PSF, DCD)
+  u = MDAnalysis.Universe('topology', 'trajectory')
   h = MDAnalysis.analysis.hbonds.HydrogenBondAnalysis(u, 'protein', distance=3.0, angle=120.0)
   h.run()
 
@@ -233,6 +232,11 @@ class HydrogenBondAnalysis_OtherFF(HydrogenBondAnalysis):
    H-bonds or the whole protein when looking at ligand-protein
    interactions.
 
+.. Note::
+
+   The topology supplied and the trajectory must reflect the same total number
+   of atoms.
+
 .. TODO: how to analyse the ouput and notes on selection updating