pyglotaran STAR protocol for analysis of time-resolved fluorescence spectra of photosystem I
Global and target analysis of transient absorption spectra of photosystem I describing the protocol for Fig.5-6 and Fig.S6-8 of the Cell Press paper DOI: 10.1016/j.isci.2023.107650.
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There are many ways to setup a python environment. Here we use conda to create a new environment and install the packages needed to run the notebooks in this repository.
Create a new conda environment for this collection of packages
conda create --name pygta_protocol python=3.10
conda activate pygta_protocolNow assuming we're in the right pygta_protocol environment, lets use pip to install the requirements from this repository
pip install -r requirements.txt
# installs pyglotaran, pyglotaran-extras and ipykernel