Update umamba gha

.github/workflows/deploy-docs.yml

@@ -13,26 +13,22 @@ jobs:
       - uses: actions/checkout@v3
 
       - name: Setup Micromamba
-        uses: mamba-org/provision-with-micromamba@v16
+        uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: false
-
-      - name: Build environment
-        shell: bash -l {0}
-        run: |
-          micromamba create --name IOOS --file .binder/conda-lock.yml
-          micromamba activate IOOS
+          environment-name: IOOS
+          init-shell: bash
+          create-args: >-
+            --file .binder/conda-lock.yml
 
       - name: Build documentation
         shell: bash -l {0}
         run: |
           set -e
-          micromamba activate IOOS
           jupyter-book build jupyterbook
 
       - name: GitHub Pages action
         if: github.ref == 'refs/heads/main'
-        uses: peaceiris/actions-gh-pages@v3.9.3
+        uses: peaceiris/actions-gh-pages@v3
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: jupyterbook/_build/html

.github/workflows/test-env.yml

@@ -13,13 +13,16 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
+
       - name: Setup Micromamba
-        uses: mamba-org/provision-with-micromamba@v16
+        uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: false
-      - name: Build environment
+          environment-name: IOOS
+          init-shell: bash
+          create-args: >-
+            --file .binder/conda-lock.yml
+
+      - name: Test environment
         shell: bash -l {0}
         run: |
-          micromamba create --name IOOS --file .binder/conda-lock.yml
-          micromamba activate IOOS
           python -c 'import osgeo.gdal; print(dir(osgeo.gdal))'

.github/workflows/test_data_access_notebooks.yml

@@ -11,18 +11,14 @@ jobs:
       - uses: actions/checkout@v3
 
       - name: Setup Micromamba
-        uses: mamba-org/provision-with-micromamba@v16
+        uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: false
-
-      - name: Build environment
-        shell: bash -l {0}
-        run: |
-          micromamba create --name IOOS --file .binder/conda-lock.yml
-          micromamba activate IOOS
+          environment-name: IOOS
+          init-shell: bash
+          create-args: >-
+            --file .binder/conda-lock.yml
 
       - name: Notebook tests
         shell: bash -l {0}
         run: |
-          micromamba activate IOOS
-          pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_access_notebooks/
+          python -m pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_access_notebooks/

.github/workflows/test_data_analysis_and_visualization_notebooks.yml

@@ -11,18 +11,14 @@ jobs:
       - uses: actions/checkout@v3
 
       - name: Setup Micromamba
-        uses: mamba-org/provision-with-micromamba@v16
+        uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: false
-
-      - name: Build environment
-        shell: bash -l {0}
-        run: |
-          micromamba create --name IOOS --file .binder/conda-lock.yml
-          micromamba activate IOOS
+          environment-name: IOOS
+          init-shell: bash
+          create-args: >-
+            --file .binder/conda-lock.yml
 
       - name: Notebook tests
         shell: bash -l {0}
         run: |
-          micromamba activate IOOS
-          pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/
+          python -m pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/

.github/workflows/test_data_management_notebooks.yml

@@ -11,18 +11,14 @@ jobs:
       - uses: actions/checkout@v3
 
       - name: Setup Micromamba
-        uses: mamba-org/provision-with-micromamba@v16
+        uses: mamba-org/setup-micromamba@v1
         with:
-          environment-file: false
-
-      - name: Build environment
-        shell: bash -l {0}
-        run: |
-          micromamba create --name IOOS --file .binder/conda-lock.yml
-          micromamba activate IOOS
+          environment-name: IOOS
+          init-shell: bash
+          create-args: >-
+            --file .binder/conda-lock.yml
 
       - name: Notebook tests
         shell: bash -l {0}
         run: |
-          micromamba activate IOOS
-          pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_management_notebooks/
+          python -m pytest --nbval --nbval-lax jupyterbook/content/code_gallery/data_management_notebooks/

.pre-commit-config.yaml

@@ -35,7 +35,7 @@ repos:
       - id: add-trailing-comma
 
   - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.263
+    rev: v0.0.270
     hooks:
       - id: ruff
 

jupyterbook/content/code_gallery/data_access_notebooks/2017-01-18-siphon-explore-thredds.ipynb

@@ -16,6 +16,15 @@
     "PS: There are many interesting examples at [https://unidata.github.io/siphon/latest/examples/index.html](https://unidata.github.io/siphon/latest/examples/index.html), be sure to check them out."
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<div class=\"alert alert-danger\">\n",
+    "  <strong>This notebook is stale and won't run due to missing data upstream and changes in the libraries used.</strong>\n",
+    "</div>"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 1,
@@ -613,7 +622,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.9.16"
   }
  },
  "nbformat": 4,

pytest.ini

@@ -3,6 +3,7 @@ addopts =
     # Stale/won't fix/missing library
     --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2016-12-19-exploring_csw.ipynb"
     --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2016-12-22-boston_light_swim.ipynb"
+    --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2017-01-18-siphon-explore-thredds.ipynb"
     --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2017-03-21-ERDDAP_IOOS_Sensor_Map.ipynb"
     --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2017-07-25-HFRadar_currents.ipynb"
     --ignore="jupyterbook/content/code_gallery/data_access_notebooks/2017-09-09-hurricane_irma.ipynb"