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FIX: Add dask config single-threaded to build catalog from timeseries #559

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merged 2 commits into from
Jan 13, 2023
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FIX: Add dask config single-threaded to build catalog from timeseries #559

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a772279
FIX: Add dask config single-threaded to build catalog from timeseries
mgrover1 Jan 13, 2023
beb1e47
change to minus one for njobs
mgrover1 Jan 13, 2023
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5 changes: 4 additions & 1 deletion docs/source/how-to/build-a-catalog-from-timeseries-files.md
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Expand Up @@ -57,9 +57,12 @@ The only parts of ecgtools we need are the `Builder` object and the `parse_cesm_
```{code-cell} ipython3
import pathlib

import dask
import intake
from ecgtools import Builder
from ecgtools.parsers.cesm import parse_cesm_timeseries

dask.config.set(scheduler='single-threaded')
```

## Understanding the directory structure
Expand Down Expand Up @@ -90,7 +93,7 @@ cat_builder = Builder(
# Exclude the timeseries and restart directories
exclude_patterns=["*/tseries/*", "*/rest/*"],
# Number of jobs to execute - should be equal to # threads you are using
joblib_parallel_kwargs={'n_jobs': 5},
joblib_parallel_kwargs={'n_jobs': -1},
)

cat_builder
Expand Down