Merge 4ac191b into 32bf74e

NAMESPACE

@@ -1,12 +1,6 @@
 # Generated by roxygen2: do not edit by hand
 
-S3method(a_compare,character)
-S3method(a_compare,factor)
-S3method(a_compare,logical)
-S3method(a_compare,numeric)
-S3method(a_summary,character)
-S3method(a_summary,factor)
-S3method(a_summary,logical)
+S3method(a_summary,default)
 S3method(a_summary,numeric)
 S3method(as.rtable,data.frame)
 S3method(h_coxreg_inter_effect,character)
@@ -29,7 +23,6 @@ S3method(tidy,glm)
 S3method(tidy,step)
 S3method(tidy,summary.coxph)
 export(CombinationFunction)
-export(a_compare)
 export(a_count_occurrences)
 export(a_count_occurrences_by_grade)
 export(a_count_patients_sum_exposure)
@@ -42,6 +35,7 @@ export(a_odds_ratio)
 export(a_proportion)
 export(a_proportion_diff)
 export(a_summary)
+export(a_summary_output)
 export(add_rowcounts)
 export(aesi_label)
 export(analyze_num_patients)
@@ -270,7 +264,9 @@ export(summarize_num_patients)
 export(summarize_occurrences_by_grade)
 export(summarize_patients_events_in_cols)
 export(summarize_patients_exposure_in_cols)
-export(summarize_vars)
+export(summary_custom)
+export(summary_formats)
+export(summary_labels)
 export(surv_time)
 export(surv_timepoint)
 export(tabulate_rsp_biomarkers)

NEWS.md

@@ -2,13 +2,18 @@
 
 ### Enhancements
 * Added method for `character` class to `h_coxreg_inter_effect` enabling `character` covariates in `summarize_coxreg`.
+* Refactored `a_summary` to no longer use helper function `create_afun_summary`. 
+* Refactored `summarize_vars` and `compare_vars` to use refactored `a_summary`.
+* Created new internal helper function `ungroup_stats` to ungroup and format statistics calculated for factor variables.
 * Started deprecation cycle for `summarize_vars` and `control_summarize_vars`. Renamed into `analyze_vars` and `control_analyze_vars` to reflect underlying `rtables` machinery while keeping backward compatibility with aliases.
 * Added `ylim` argument to `g_km` to allow the user to set custom limits for the y-axis.
 * Added assertion to `g_km` which checks whether there is one arm present in the data when `annot_coxph` is true.
 * Added `flag_labels` argument to `s_count_patients_with_flags` to enable more label handling options in `count_patients_by_flags`. 
 
 ### Miscellaneous
 * Began deprecation of `time_unit_input` and `time_unit_output` arguments and replaced them with the `input_time_unit` and `num_pt_year`, respectively, in `control_incidence_rate`.
+* Deprecated `a_compare` and replaced it with `a_summary` with argument `compare = TRUE`.
+* Deprecated helper functions `create_afun_summary` and `create_afun_compare` which are no longer used by `a_summary` and `a_compare` respectively.
 * Removed deprecated `pairwise` function.
 
 ### Bug Fixes

R/analyze_functions.R

@@ -32,7 +32,7 @@
 #'   leverage `analyze_colvars` to have the context split in rows and the analysis
 #'   methods in columns.
 #' * [summarize_change()]
-#' * [analyze_vars()]: formerly known as [summarize_vars()], it was renamed to reflect
+#' * [analyze_vars()]: formerly known as `summarize_vars()`, it was renamed to reflect
 #'   core function [rtables::analyze()].
 #' * [surv_time()]
 #' * [surv_timepoint()]