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update rcode header #770

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update rcode header #770

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25 changes: 8 additions & 17 deletions R/get_rcode.R
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Original file line number Diff line number Diff line change
Expand Up @@ -144,27 +144,18 @@ get_rcode <- function(datasets = NULL,
get_datasets_code <- function(datanames, datasets) {
str_code <- datasets$get_code(datanames)
if (length(str_code) == 0 || (length(str_code) == 1 && str_code == "")) {
str_code <- paste0(c(
"#################################################################",
"# ___ ____ ____ ___ ____ ____ ____ ____ ____ ____ _ _ _ ____ #",
"# |__] |__/ |___ |__] |__/ | | | |___ [__ [__ | |\\ | | __ #",
"# | | \\ |___ | | \\ |__| |___ |___ ___] ___] | | \\| |__] #",
"# _ ____ ____ _ _ ___ ___ _ _ #",
"# | [__ |___ |\\/| |__] | \\_/ #",
"# | ___] |___ | | | | | #",
"#################################################################\n"
), collapse = "\n")
str_code <- "message('Preprocessing is empty')"
} else if (length(str_code) > 0) {
str_code <- paste0(str_code, "\n\n")
}
if (!datasets$get_check()) {
check_note_string <- paste0(
c(
"## NOTE: Reproducibility of data import and preprocessing was not",
"## explicitly checked (argument \"check = FALSE\" is set).",
"## The app developer has the choice to check the reproducibility",
"## and might have omitted this step for some reason. Please reach",
"## out to the app developer for details.\n"
"warning(paste(\"Reproducibility of data import and preprocessing was not\",",
" \"explicitly checked (argument 'check = FALSE' is set).\",",
" \"The app developer has the choice to check the reproducibility\",",
" \"and might have omitted this step for some reason. Please reach\",",
" \"out to the app developer for details.\n\"))"
),
collapse = "\n"
)
Expand All @@ -177,8 +168,8 @@ get_datasets_code <- function(datanames, datasets) {
datanames,
function(dataname) {
sprintf(
"# %s MD5 hash at the time of analysis: %s",
dataname,
"stopifnot(%s == '%s')",
deparse1(datasets$get_filtered_dataset(dataname)$get_hash_call()),
datasets$get_filtered_dataset(dataname)$get_hash()
)
},
Expand Down