Create minimal test data for examples and initialize the substitution

R/data.R

@@ -0,0 +1,30 @@
+#' Simulated CDISC Data for Examples
+#'
+#' @format rds (data.frame)
+#'
+#' @name ex_data
+NULL
+
+#' @describeIn ex_data ADSL data
+#'
+"tmc_ex_adsl"
+
+#' @describeIn ex_data ADAE data
+#'
+"tmc_ex_adae"
+
+#' @describeIn ex_data ADLB data
+#'
+"tmc_ex_adlb"
+
+#' @describeIn ex_data ADPP data
+#'
+"tmc_ex_adpp"
+
+#' @describeIn ex_data ADRS data
+#'
+"tmc_ex_adrs"
+
+#' @describeIn ex_data ADTTE data
+#'
+"tmc_ex_adtte"

R/tm_t_pp_laboratory.R

@@ -108,18 +108,20 @@ template_laboratory <- function(dataname = "ANL",
 #' @export
 #'
 #' @examples
-#' library(scda)
-#' ADSL <- synthetic_cdisc_dataset("latest", "adsl")
-#' ADLB <- synthetic_cdisc_dataset("latest", "adlb")
+#'
+#' # Complete synthetic data
+#' # ADSL <- scda::synthetic_cdisc_dataset("latest", "adsl")
+#' # ADLB <- scda::synthetic_cdisc_dataset("latest", "adlb")
+#'
+#' # Reduced data from tern
+#' ADSL <- tmc_ex_adsl
+#' ADLB <- tmc_ex_adlb %>%
+#'   dplyr::mutate(ADY = ceiling(as.numeric(difftime(.data$ADTM, .data$TRTSDTM, units = "days"))))
 #'
 #' app <- init(
 #'   data = cdisc_data(
-#'     cdisc_dataset("ADSL", ADSL,
-#'       code = 'ADSL <- synthetic_cdisc_dataset("latest", "adsl")'
-#'     ),
-#'     cdisc_dataset("ADLB", ADLB,
-#'       code = 'ADLB <- synthetic_cdisc_dataset("latest", "adlb")'
-#'     )
+#'     cdisc_dataset("ADSL", ADSL),
+#'     cdisc_dataset("ADLB", ADLB)
 #'   ),
 #'   modules = modules(
 #'     tm_t_pp_laboratory(

R/tm_t_summary.R

@@ -219,12 +219,10 @@ template_summary <- function(dataname,
 #'
 #' @export
 #' @examples
-#' # Preparation of the test case.
-#' library(dplyr)
-#' library(scda)
-#' library(tern)
-#'
-#' adsl <- synthetic_cdisc_dataset("latest", "adsl")
+#' # Preparation of the test case
+#' # adsl <- scda::synthetic_cdisc_dataset("latest", "adsl") # complete data
+#' adsl <- tmc_ex_adsl
+#' adsl$EOSDY[1] <- NA_integer_
 #'
 #' # Include `EOSDY` and `DCSREAS` variables below because they contain missing data.
 #' stopifnot(
@@ -234,9 +232,7 @@ template_summary <- function(dataname,
 #'
 #' app <- init(
 #'   data = cdisc_data(
-#'     cdisc_dataset("ADSL", adsl),
-#'     code = 'ADSL <- synthetic_cdisc_dataset("latest", "adsl")',
-#'     check = TRUE
+#'     cdisc_dataset("ADSL", adsl)
 #'   ),
 #'   modules = modules(
 #'     tm_t_summary(