remove rlangs :=

insightsengineering · Jan 26, 2024 · 04537f1 · 04537f1
1 parent f2c0bfd
commit 04537f1
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Showing 5 changed files with 13 additions and 12 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -71,6 +71,5 @@ import(teal.transform)
 import(tern)
 importFrom(dplyr,"%>%")
 importFrom(methods,is)
-importFrom(rlang,":=")
 importFrom(rlang,.data)
 importFrom(tern.gee,lsmeans)
diff --git a/R/teal.modules.clinical.R b/R/teal.modules.clinical.R
@@ -8,7 +8,7 @@
 #' @import tern
 #' @importFrom dplyr %>%
 #' @importFrom methods is
-#' @importFrom rlang := .data
+#' @importFrom rlang .data
 #' @importFrom tern.gee lsmeans
 #'
 #' @name teal.modules.clinical

diff --git a/R/tm_t_events.R b/R/tm_t_events.R
@@ -100,7 +100,7 @@ template_events <- function(dataname,
       data_list <- add_expr(
         data_list,
         substitute(
-          expr = anl <- anl %>% dplyr::mutate(`:=`(hlt, as.character(hlt))),
+          expr = anl[[hlt]] <- as.character(anl[[hlt]]),
           env = list(hlt = as.name(hlt))
         )
       )
@@ -110,7 +110,7 @@ template_events <- function(dataname,
       data_list <- add_expr(
         data_list,
         substitute(
-          expr = anl <- anl %>% dplyr::mutate(`:=`(llt, as.character(llt))),
+          expr = anl[[hlt]] <- as.character(anl[[hlt]]),
           env = list(llt = as.name(llt))
         )
       )

diff --git a/R/tm_t_events_summary.R b/R/tm_t_events_summary.R
@@ -111,10 +111,13 @@ template_events_summary <- function(anl_name,
   data_list <- add_expr(
     data_list,
     substitute(
-      expr = anl <- anl %>% dplyr::mutate(
-        `:=`(a, as.character(a)),
-        USUBJID_AESEQ = paste(usubjid, aeseq_var, sep = "@@")
-      ),
+      expr = {
+        anl[[a]] <- as.character(anl[[a]])
+        anl <- anl %>%
+          dplyr::mutate(
+            USUBJID_AESEQ = paste(usubjid, aeseq_var, sep = "@@")
+          )
+      },
       env = list(
         a = as.name(llt),
         usubjid = as.name("USUBJID"),

diff --git a/R/tm_t_pp_laboratory.R b/R/tm_t_pp_laboratory.R
@@ -59,8 +59,8 @@ template_laboratory <- function(dataname = "ANL",
             timevar = "INDEX"
           )
         colnames(labor_table_raw)[-c(1:3)] <- unique(labor_table_base$INDEX)
-        labor_table_raw <- labor_table_raw %>%
-          dplyr::mutate(param_char := clean_description(.data[[param_char]]))
+
+        labor_table_raw[[param_char]] <- clean_description(labor_table_raw[[param_char]])
 
         labor_table_raw <- rlistings::as_listing(
           labor_table_raw,
@@ -79,8 +79,7 @@ template_laboratory <- function(dataname = "ANL",
             timevar = "INDEX"
           )
         colnames(labor_table_html)[-c(1:3)] <- unique(labor_table_base$INDEX)
-        labor_table_html <- labor_table_html %>%
-          dplyr::mutate(param_char := clean_description(.data[[param_char]]))
+        labor_table_html[[param_char]] <- clean_description(labor_table_html[[param_char]])
 
         labor_table_html_dt <- DT::datatable(labor_table_html, escape = FALSE)
         labor_table_html_dt$dependencies <- c(