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Introduce teal_data class #75

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Introduce teal_data class #75

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83713f6
exploratory
gogonzo Oct 4, 2023
b34e0ed
early-dev
gogonzo Oct 4, 2023
663c156
efficacy and obtain teal.data:::default_cdisc_keys
gogonzo Oct 4, 2023
f0d2dc3
longitudinal
gogonzo Oct 4, 2023
794250b
patient profile
gogonzo Oct 4, 2023
e7ef8eb
RNA-seq
gogonzo Oct 4, 2023
e3ba0d9
safety
gogonzo Oct 4, 2023
698a4e8
Merge branch 'main' into teal_data@main
gogonzo Oct 19, 2023
468f66a
fix cdisc_data and join_keys calls
gogonzo Oct 25, 2023
af53bf6
remove thrash
gogonzo Oct 25, 2023
67a9a7a
push code into teal_data with qenv mechanism (#90)
chlebowa Oct 27, 2023
054fd51
remove load_all
gogonzo Oct 27, 2023
7946d5d
libraries
gogonzo Oct 31, 2023
8409985
logo to the top
gogonzo Oct 31, 2023
aeeec7d
tidyup options call
gogonzo Oct 31, 2023
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28 changes: 10 additions & 18 deletions RNA-seq/app.R
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Original file line number Diff line number Diff line change
@@ -1,28 +1,20 @@
library(teal.modules.hermes)
library(teal.modules.general)
library(scda.2022)
library(nestcolor)

options(shiny.useragg = FALSE)

nest_logo <- "https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/PNG/nest.png"

# code>
mae <- hermes::multi_assay_experiment
mae_data <- dataset("MAE", mae)

adtte <- scda::synthetic_cdisc_data("rcd_2022_06_27")$adtte %>%
dplyr::mutate(is_event = CNSR == 0)
## Data reproducible code ----
data <- teal_data()
data <- within(data, {
library(scda.2022)
library(nestcolor)
ADTTE <- scda::synthetic_cdisc_data("rcd_2022_06_27")$adtte %>%
dplyr::mutate(is_event = CNSR == 0)
MAE <- hermes::multi_assay_experiment
})
datanames(data) <- c("ADTTE", "MAE")

data <- teal_data(
dataset(
"ADTTE",
adtte,
code = 'adtte <- scda::synthetic_cdisc_data("rcd_2022_06_27")$adtte %>%
dplyr::mutate(is_event = CNSR == 0)'
),
dataset("MAE", mae)
)

app <- init(
data = data,
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