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  1. happ happ Public

    Workflow for processing deep metabarcoding data

    Python 1

  2. amplicon-multi-cutadapt amplicon-multi-cutadapt Public

    Forked from biodiversitydata-se/amplicon-multi-cutadapt

    Preprocessing of amplicon sequencing reads via a 4-step cutadapt workflow

    Python 1 1

  3. coidb coidb Public

    Forked from biodiversitydata-se/coidb

    A small python package for downloading and processing metabarcoding references

    Python

  4. utils-clean_asv_data utils-clean_asv_data Public

    Code to clean up ASV clustering results and generate stats

    Python

  5. paper-data paper-data Public

    Insect Biome Atlas primary data

    Jupyter Notebook

  6. ASV-taxonomy ASV-taxonomy Public

    Python

Repositories

Showing 10 of 11 repositories
  • paper-data Public

    Insect Biome Atlas primary data

    Jupyter Notebook 0 GPL-3.0 0 1 0 Updated Mar 15, 2025
  • utils Public

    R scripts useful for working with the IBA data

    R 0 GPL-3.0 0 0 0 Updated Jan 23, 2025
  • IBA_R_package Public

    Repository for IBA R package

    R 0 GPL-3.0 0 0 0 Updated Jan 12, 2025
  • happ Public

    Workflow for processing deep metabarcoding data

    Python 1 0 1 0 Updated Jan 4, 2025
  • paper-bioinformatic-methods Public

    Repo for figures and scripts associated with paper on bioformatic methods within IBA

    R 0 0 0 0 Updated Dec 15, 2024
  • paper-lep-efficiency Public

    Repository with data and code for the ms on evaluating IBA efficiency using Swedish Lepidoptera

    HTML 0 GPL-3.0 0 0 0 Updated Dec 11, 2024
  • paper-metagenomics Public

    Data and code for matching metagenomic and metabarcoding results, used in Lopez-Clinton et al ms.

    R 0 GPL-3.0 0 0 0 Updated Nov 25, 2024
  • amplicon-multi-cutadapt Public Forked from biodiversitydata-se/amplicon-multi-cutadapt

    Preprocessing of amplicon sequencing reads via a 4-step cutadapt workflow

    Python 1 3 0 0 Updated Nov 12, 2024
  • ASV-taxonomy Public
    Python 0 0 0 0 Updated Aug 14, 2024
  • coidb Public Forked from biodiversitydata-se/coidb

    A small python package for downloading and processing metabarcoding references

    Python 0 MIT 1 0 0 Updated May 11, 2024