Merge pull request #179 from information-artifact-ontology/omo-releas…

…e-121124 Update release files 12 November 2024
information-artifact-ontology · Nov 13, 2024 · 234a208 · 234a208
2 parents 1bb8503 + cc2a960
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diff --git a/omo-full.json b/omo-full.json
diff --git a/omo-full.obo b/omo-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omo/releases/2023-11-02/omo-full.owl
+data-version: omo/releases/2024-11-13/omo-full.owl
 synonymtypedef: OMO:0003000 "abbreviation"
 synonymtypedef: OMO:0003001 "ambiguous synonym"
 synonymtypedef: OMO:0003002 "dubious synonym"
@@ -13,47 +13,51 @@ synonymtypedef: OMO:0003009 "legal name"
 synonymtypedef: OMO:0003010 "International Nonproprietary Name"
 synonymtypedef: OMO:0003011 "latin term"
 synonymtypedef: OMO:0003012 "acronym"
+idspace: dc http://purl.org/dc/elements/1.1/ 
+idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# 
+idspace: protege http://protege.stanford.edu/plugins/owl/protege# 
+idspace: terms http://purl.org/dc/terms/ 
 ontology: omo/omo-full
-property_value: defaultLanguage "en" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Alan Ruttenberg" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Albert Goldfain" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Barry Smith" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Bjoern Peters" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Carlo Torniai" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Chris Mungall" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Chris Stoeckert" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Christian A. Boelling" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Darren Natale" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "David Osumi-Sutherland" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Gwen Frishkoff" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Holger Stenzhorn" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "James A. Overton" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "James Malone" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Jennifer Fostel" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Jie Zheng" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Jonathan Rees" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Larisa Soldatova" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Lawrence Hunter" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Matt Brush" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Melanie Courtot" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Michel Dumontier" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Paolo Ciccarese" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Pat Hayes" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Philippe Rocca-Serra" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Randy Dipert" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Ron Rudnicki" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Satya Sahoo" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Sivaram Arabandi" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Werner Ceusters" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "William Duncan" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "William Hogan" xsd:string
-property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He" xsd:string
-property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
-property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
-property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-11-02" xsd:string
+property_value: dc:contributor "Adam Goldstein" xsd:string
+property_value: dc:contributor "Alan Ruttenberg" xsd:string
+property_value: dc:contributor "Albert Goldfain" xsd:string
+property_value: dc:contributor "Barry Smith" xsd:string
+property_value: dc:contributor "Bjoern Peters" xsd:string
+property_value: dc:contributor "Carlo Torniai" xsd:string
+property_value: dc:contributor "Chris Mungall" xsd:string
+property_value: dc:contributor "Chris Stoeckert" xsd:string
+property_value: dc:contributor "Christian A. Boelling" xsd:string
+property_value: dc:contributor "Darren Natale" xsd:string
+property_value: dc:contributor "David Osumi-Sutherland" xsd:string
+property_value: dc:contributor "Gwen Frishkoff" xsd:string
+property_value: dc:contributor "Holger Stenzhorn" xsd:string
+property_value: dc:contributor "James A. Overton" xsd:string
+property_value: dc:contributor "James Malone" xsd:string
+property_value: dc:contributor "Jennifer Fostel" xsd:string
+property_value: dc:contributor "Jie Zheng" xsd:string
+property_value: dc:contributor "Jonathan Rees" xsd:string
+property_value: dc:contributor "Larisa Soldatova" xsd:string
+property_value: dc:contributor "Lawrence Hunter" xsd:string
+property_value: dc:contributor "Mathias Brochhausen" xsd:string
+property_value: dc:contributor "Matt Brush" xsd:string
+property_value: dc:contributor "Melanie Courtot" xsd:string
+property_value: dc:contributor "Michel Dumontier" xsd:string
+property_value: dc:contributor "Paolo Ciccarese" xsd:string
+property_value: dc:contributor "Pat Hayes" xsd:string
+property_value: dc:contributor "Philippe Rocca-Serra" xsd:string
+property_value: dc:contributor "Randy Dipert" xsd:string
+property_value: dc:contributor "Ron Rudnicki" xsd:string
+property_value: dc:contributor "Satya Sahoo" xsd:string
+property_value: dc:contributor "Sivaram Arabandi" xsd:string
+property_value: dc:contributor "Werner Ceusters" xsd:string
+property_value: dc:contributor "William Duncan" xsd:string
+property_value: dc:contributor "William Hogan" xsd:string
+property_value: dc:contributor "Yongqun (Oliver) He" xsd:string
+property_value: dc:description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
+property_value: dc:title "OBO Metadata Ontology" xsd:string
+property_value: owl:versionInfo "2024-11-13" xsd:string
+property_value: protege:defaultLanguage "en" xsd:string
+property_value: terms:license https://creativecommons.org/publicdomain/zero/1.0/
 
 [Term]
 id: IAO:0000027
@@ -64,7 +68,6 @@ property_value: IAO:0000111 "data item" xsd:string
 [Term]
 id: IAO:0000030
 name: information content entity
-is_a: BFO:0000031
 property_value: IAO:0000111 "information content entity" xsd:string
 
 [Term]

diff --git a/omo-full.owl b/omo-full.owl
@@ -12,7 +12,7 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omo/omo-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2024-11-13/omo-full.owl"/>
         <protege:defaultLanguage>en</protege:defaultLanguage>
         <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
         <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
@@ -52,7 +52,7 @@
         <dc:description xml:lang="en">An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).</dc:description>
         <dc:title xml:lang="en">OBO Metadata Ontology</dc:title>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-11-02</owl:versionInfo>
+        <owl:versionInfo>2024-11-13</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -762,6 +762,19 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OMO_0004000 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0004000">
+        <obo:IAO_0000112>A serial number such as &quot;12324X&quot;; a stop sign; a written proper name such as &quot;OBI</obo:IAO_0000112>
+        <obo:IAO_0000115>An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/144"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-6523-4866"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2024-03-25</terms:created>
+        <rdfs:label>has symbol</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.org/dc/elements/1.1/contributor -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
@@ -901,6 +914,19 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
+        <obo:IAO_0000112>disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) &quot;NCIT:C41009&quot;^^xsd:string</obo:IAO_0000112>
+        <obo:IAO_0000115>An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/123"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0002-7356-1779"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2024-03-18</terms:created>
+        <rdfs:label>has cross-reference</rdfs:label>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
 
     <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
@@ -968,12 +994,6 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
-    <!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
@@ -987,7 +1007,6 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
     <!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
         <obo:IAO_0000111 xml:lang="en">information content entity</obo:IAO_0000111>
         <rdfs:label xml:lang="en">information content entity</rdfs:label>
     </owl:Class>
@@ -1635,5 +1654,5 @@ No imports</obo:IAO_0000115>
 
 
 
-<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->