refine loginfo about graprag progress (#1823)

### What problem does this PR solve?



### Type of change

- [x] Refactoring

api/db/services/document_service.py

@@ -317,7 +317,8 @@ def update_progress(cls):
                     if 0 <= t.progress < 1:
                         finished = False
                     prg += t.progress if t.progress >= 0 else 0
-                    msg.append(t.progress_msg)
+                    if t.progress_msg not in msg:
+                        msg.append(t.progress_msg)
                     if t.progress == -1:
                         bad += 1
                 prg /= len(tsks)

graphrag/community_reports_extractor.py

@@ -23,16 +23,16 @@
 import re
 import traceback
 from dataclasses import dataclass
-from typing import Any, List
-
+from typing import Any, List, Callable
 import networkx as nx
 import pandas as pd
-
 from graphrag import leiden
 from graphrag.community_report_prompt import COMMUNITY_REPORT_PROMPT
 from graphrag.leiden import add_community_info2graph
 from rag.llm.chat_model import Base as CompletionLLM
 from graphrag.utils import ErrorHandlerFn, perform_variable_replacements, dict_has_keys_with_types
+from rag.utils import num_tokens_from_string
+from timeit import default_timer as timer
 
 log = logging.getLogger(__name__)
 
@@ -67,11 +67,14 @@ def __init__(
         self._on_error = on_error or (lambda _e, _s, _d: None)
         self._max_report_length = max_report_length or 1500
 
-    def __call__(self, graph: nx.Graph):
+    def __call__(self, graph: nx.Graph, callback: Callable | None = None):
         communities: dict[str, dict[str, List]] = leiden.run(graph, {})
+        total = sum([len(comm.items()) for _, comm in communities.items()])
         relations_df = pd.DataFrame([{"source":s, "target": t, **attr} for s, t, attr in graph.edges(data=True)])
         res_str = []
         res_dict = []
+        over, token_count = 0, 0
+        st = timer()
         for level, comm in communities.items():
             for cm_id, ents in comm.items():
                 weight = ents["weight"]
@@ -84,9 +87,10 @@ def __call__(self, graph: nx.Graph):
                     "relation_df": rela_df.to_csv(index_label="id")
                 }
                 text = perform_variable_replacements(self._extraction_prompt, variables=prompt_variables)
-                gen_conf = {"temperature": 0.5}
+                gen_conf = {"temperature": 0.3}
                 try:
                     response = self._llm.chat(text, [], gen_conf)
+                    token_count += num_tokens_from_string(text + response)
                     response = re.sub(r"^[^\{]*", "", response)
                     response = re.sub(r"[^\}]*$", "", response)
                     print(response)
@@ -108,6 +112,8 @@ def __call__(self, graph: nx.Graph):
                 add_community_info2graph(graph, ents, response["title"])
                 res_str.append(self._get_text_output(response))
                 res_dict.append(response)
+                over += 1
+                if callback: callback(msg=f"Communities: {over}/{total}, elapsed: {timer() - st}s, used tokens: {token_count}")
 
         return CommunityReportsResult(
             structured_output=res_dict,

graphrag/graph_extractor.py

@@ -21,13 +21,14 @@
 import re
 import traceback
 from dataclasses import dataclass
-from typing import Any, Mapping
+from typing import Any, Mapping, Callable
 import tiktoken
 from graphrag.graph_prompt import GRAPH_EXTRACTION_PROMPT, CONTINUE_PROMPT, LOOP_PROMPT
 from graphrag.utils import ErrorHandlerFn, perform_variable_replacements, clean_str
 from rag.llm.chat_model import Base as CompletionLLM
 import networkx as nx
 from rag.utils import num_tokens_from_string
+from timeit import default_timer as timer
 
 DEFAULT_TUPLE_DELIMITER = "<|>"
 DEFAULT_RECORD_DELIMITER = "##"
@@ -103,7 +104,9 @@ def __init__(
         self._loop_args = {"logit_bias": {yes[0]: 100, no[0]: 100}, "max_tokens": 1}
 
     def __call__(
-        self, texts: list[str], prompt_variables: dict[str, Any] | None = None
+        self, texts: list[str],
+            prompt_variables: dict[str, Any] | None = None,
+            callback: Callable | None = None
     ) -> GraphExtractionResult:
         """Call method definition."""
         if prompt_variables is None:
@@ -127,12 +130,17 @@ def __call__(
             ),
         }
 
+        st = timer()
+        total = len(texts)
+        total_token_count = 0
         for doc_index, text in enumerate(texts):
             try:
                 # Invoke the entity extraction
-                result = self._process_document(text, prompt_variables)
+                result, token_count = self._process_document(text, prompt_variables)
                 source_doc_map[doc_index] = text
                 all_records[doc_index] = result
+                total_token_count += token_count
+                if callback: callback(msg=f"{doc_index+1}/{total}, elapsed: {timer() - st}s, used tokens: {total_token_count}")
             except Exception as e:
                 logging.exception("error extracting graph")
                 self._on_error(
@@ -162,9 +170,11 @@ def _process_document(
             **prompt_variables,
             self._input_text_key: text,
         }
+        token_count = 0
         text = perform_variable_replacements(self._extraction_prompt, variables=variables)
-        gen_conf = {"temperature": 0.5}
+        gen_conf = {"temperature": 0.3}
         response = self._llm.chat(text, [], gen_conf)
+        token_count = num_tokens_from_string(text + response)
 
         results = response or ""
         history = [{"role": "system", "content": text}, {"role": "assistant", "content": response}]
@@ -185,7 +195,7 @@ def _process_document(
             if continuation != "YES":
                 break
 
-        return results
+        return results, token_count
 
     def _process_results(
         self,

graphrag/index.py

@@ -86,7 +86,7 @@ def build_knowlege_graph_chunks(tenant_id: str, chunks: List[str], callback, ent
     for i in range(len(chunks)):
         tkn_cnt = num_tokens_from_string(chunks[i])
         if cnt+tkn_cnt >= left_token_count and texts:
-            threads.append(exe.submit(ext, texts, {"entity_types": entity_types}))
+            threads.append(exe.submit(ext, texts, {"entity_types": entity_types}, callback))
             texts = []
             cnt = 0
         texts.append(chunks[i])
@@ -98,7 +98,7 @@ def build_knowlege_graph_chunks(tenant_id: str, chunks: List[str], callback, ent
     graphs = []
     for i, _ in enumerate(threads):
         graphs.append(_.result().output)
-        callback(0.5 + 0.1*i/len(threads))
+        callback(0.5 + 0.1*i/len(threads), f"Entities extraction progress ... {i+1}/{len(threads)}")
 
     graph = reduce(graph_merge, graphs)
     er = EntityResolution(llm_bdl)
@@ -125,7 +125,7 @@ def build_knowlege_graph_chunks(tenant_id: str, chunks: List[str], callback, ent
 
     callback(0.6, "Extracting community reports.")
     cr = CommunityReportsExtractor(llm_bdl)
-    cr = cr(graph)
+    cr = cr(graph, callback=callback)
     for community, desc in zip(cr.structured_output, cr.output):
         chunk = {
             "title_tks": rag_tokenizer.tokenize(community["title"]),

rag/nlp/search.py

@@ -138,7 +138,7 @@ def search(self, req, idxnm, emb_mdl=None):
         es_logger.info("TOTAL: {}".format(self.es.getTotal(res)))
         if self.es.getTotal(res) == 0 and "knn" in s:
             bqry, _ = self.qryr.question(qst, min_match="10%")
-            bqry = self._add_filters(bqry)
+            bqry = self._add_filters(bqry, req)
             s["query"] = bqry.to_dict()
             s["knn"]["filter"] = bqry.to_dict()
             s["knn"]["similarity"] = 0.17