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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell Public

    DCell browser and gene deletion simulator

    JavaScript 122 34

  2. hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 37 22

Repositories

Showing 10 of 178 repositories
  • G2PT Public
    Jupyter Notebook 8 2 1 0 Updated Mar 26, 2025
  • cookiecutter-musicpypackage Public
    Python 0 BSD-3-Clause 0 1 0 Updated Mar 26, 2025
  • cansrmapp Public
    Python 0 0 0 0 Updated Mar 25, 2025
  • cellmaps_pipeline Public
    Python 4 MIT 0 0 0 Updated Mar 21, 2025
  • cellmaps_hierarchyeval Public

    Code for hierarchy evaluation

    Python 0 MIT 0 0 0 Updated Mar 20, 2025
  • cellmaps_generate_hierarchy Public
    Python 0 MIT 0 1 0 Updated Mar 19, 2025
  • cellmaps_coembedding Public
    Python 0 MIT 1 1 0 Updated Mar 19, 2025
  • cellmaps_ppi_embedding Public
    Python 0 MIT 1 0 0 Updated Mar 19, 2025
  • cellmaps_image_embedding Public
    Python 0 MIT 1 0 0 Updated Mar 19, 2025
  • cellmaps_imagedownloader Public
    Python 0 MIT 0 5 0 Updated Mar 19, 2025
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