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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 181 repositories
  • search-python-sdk Public

    Python SDK to access HuBMAP Search API

    hubmapconsortium/search-python-sdk’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 12, 2025
  • entity-python-sdk Public

    Python SDK to access HuBMAP Entity API

    hubmapconsortium/entity-python-sdk’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 12, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 3 90 8 Updated Apr 11, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 13 MIT 2 200 31 Updated Apr 11, 2025
  • codex-pipeline Public

    CODEX data processing code

    hubmapconsortium/codex-pipeline’s past year of commit activity
    Python 12 GPL-3.0 5 6 2 Updated Apr 11, 2025
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 9 Updated Apr 11, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 6 79 7 Updated Apr 11, 2025
  • entity-api Public

    A set of web service calls to return information about HuBMAP entities

    hubmapconsortium/entity-api’s past year of commit activity
    Python 3 MIT 1 49 1 Updated Apr 11, 2025
  • ingest-validation-tests Public
    hubmapconsortium/ingest-validation-tests’s past year of commit activity
    Python 0 0 4 1 Updated Apr 10, 2025
  • aws-api-gateway Public

    API definitions, Lambda functions/authorizers/layer, and documentations to work with AWS API Gateway

    hubmapconsortium/aws-api-gateway’s past year of commit activity
    Python 1 0 1 0 Updated Apr 10, 2025
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