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Cromwell 83
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| Original file line number | Diff line number | Diff line change |
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@@ -3,3 +3,4 @@ | |
| *.MD text | ||
| *.java text | ||
| *.html text | ||
| docs/api/RESTAPI.md linguist-generated=true | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,71 @@ | ||
| name: chart-update-on-merge | ||
|
|
||
| on: | ||
| pull_request: | ||
| types: | ||
| - closed | ||
|
|
||
| jobs: | ||
| chart-update: | ||
| name: Cromwhelm Chart Auto Updater | ||
| if: github.event.pull_request.merged == true | ||
| runs-on: self-hosted # Faster machines; see https://github.com/broadinstitute/cromwell/settings/actions/runners | ||
| steps: | ||
| - name: Clone Cromwell | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| repository: broadinstitute/cromwell | ||
| token: ${{ secrets.BROADBOT_GITHUB_TOKEN }} # Has to be set at checkout AND later when pushing to work | ||
| path: cromwell | ||
| - uses: olafurpg/setup-scala@v10 | ||
| with: | ||
| java-version: adopt@1.11 | ||
| - name: Clone Cromwhelm | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| repository: broadinstitute/cromwhelm | ||
| token: ${{ secrets.BROADBOT_GITHUB_TOKEN }} # Has to be set at checkout AND later when pushing to work | ||
| path: cromwhelm | ||
| - name: Find Cromwell short SHA | ||
| run: | | ||
| set -e | ||
| cd cromwell | ||
| echo "CROMWELL_SHORT_SHA=`git rev-parse --short $GITHUB_SHA`" >> $GITHUB_ENV | ||
| - name: Find Cromwell release number | ||
| run: | | ||
| set -e | ||
| previous_version=$(curl -X GET https://api.github.com/repos/broadinstitute/cromwell/releases/latest | jq .tag_name | xargs) | ||
| if ! [[ "${previous_version}" =~ ^[0-9][0-9]+$ ]]; then | ||
| exit 1 | ||
| fi | ||
| echo "CROMWELL_NUMBER=$((previous_version + 1))" >> $GITHUB_ENV | ||
| - name: Save complete image ID | ||
| run: | | ||
| echo "CROMWELL_SNAP_VERSION=`echo "$CROMWELL_NUMBER-$CROMWELL_SHORT_SHA-SNAP"`" >> $GITHUB_ENV | ||
| # `DSDEJENKINS_PASSWORD` auto syncs from vault with https://github.com/broadinstitute/terraform-ap-deployments/pull/614 | ||
| - name: Login to Docker Hub | ||
| uses: docker/login-action@v1 | ||
| with: | ||
| username: dsdejenkins | ||
| password: ${{ secrets.DSDEJENKINS_PASSWORD }} | ||
| - name: Build Cromwell Docker | ||
| run: | | ||
| set -e | ||
| cd cromwell | ||
| sbt server/docker | ||
| docker push broadinstitute/cromwell:$CROMWELL_SNAP_VERSION | ||
| - name: Edit & push chart | ||
| env: | ||
| BROADBOT_GITHUB_TOKEN: ${{ secrets.BROADBOT_GITHUB_TOKEN }} | ||
| run: | | ||
| set -e | ||
| cd cromwhelm | ||
| git checkout main | ||
| ls -la | ||
| sed -i "s/appVersion.*/appVersion: \"$CROMWELL_SNAP_VERSION\"/" cromwell-helm/Chart.yaml | ||
| sed -i "s/image: broadinstitute\/cromwell.*/image: broadinstitute\/cromwell:$CROMWELL_SNAP_VERSION/" cromwell-helm/templates/cromwell.yaml | ||
| git diff | ||
| git config --global user.name "broadbot" | ||
| git config --global user.email "broadbot@broadinstitute.org" | ||
| git commit -am "Auto update to Cromwell $CROMWELL_SNAP_VERSION" | ||
| git push https://broadbot:$BROADBOT_GITHUB_TOKEN@github.com/broadinstitute/cromwhelm.git main |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,73 @@ | ||
| name: Make publish PRs | ||
|
|
||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| old_cromwell_version: | ||
| description: 'What version of Cromwell to update from' | ||
| required: true | ||
| new_cromwell_version: | ||
| description: 'What version of Cromwell to update to' | ||
| required: true | ||
| jira_ticket: | ||
| description: 'The JIRA ticket to link the update PR to' | ||
| required: true | ||
|
|
||
| jobs: | ||
| make-firecloud-develop-pr: | ||
| name: Create firecloud-develop PR | ||
| runs-on: self-hosted # Faster machines; see https://github.com/broadinstitute/cromwell/settings/actions/runners | ||
| steps: | ||
| - name: Clone firecloud-develop | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| repository: broadinstitute/firecloud-develop | ||
| token: ${{ secrets.BROADBOT_GITHUB_TOKEN }} # Has to be set at checkout AND later when pushing to work | ||
| path: firecloud-develop | ||
| - name: Update & push to firecloud-develop | ||
| id: update-and-push | ||
| env: | ||
| BROADBOT_GITHUB_TOKEN: ${{ secrets.BROADBOT_GITHUB_TOKEN }} | ||
| run: | | ||
| cd firecloud-develop | ||
| JIRA_TICKET=${{ github.event.inputs.jira_ticket }} | ||
| OLD_CROMWELL_V=${{ github.event.inputs.old_cromwell_version }} | ||
| NEW_CROMWELL_V=${{ github.event.inputs.new_cromwell_version }} | ||
| NEW_BRANCH_NAME="${JIRA_TICKET}_cromwell_${NEW_CROMWELL_V}" | ||
| TEMP=$(mktemp) | ||
| git checkout -b "${NEW_BRANCH_NAME}" | ||
| SED_STRING="s/${OLD_CROMWELL_V}/${NEW_CROMWELL_V}/g" | ||
| FILES=( "base-configs/cromwell/cromwell.conf.ctmpl" "run-context/fiab/scripts/FiaB_images.env" ) | ||
| for i in "${FILES[@]}" | ||
| do | ||
| echo "Updating ${i}" | ||
| sed "${SED_STRING}" ${i} > ${TEMP} | ||
| mv ${TEMP} ${i} | ||
| git add ${i} | ||
| done | ||
| echo "Pushing to firecloud-develop branch ${NEW_BRANCH_NAME}" | ||
| git config --global user.name "broadbot" | ||
| git config --global user.email "broadbot@broadinstitute.org" | ||
| git commit -m "Updating Cromwell version to ${NEW_CROMWELL_V}" | ||
| git push https://broadbot:$BROADBOT_GITHUB_TOKEN@github.com/broadinstitute/firecloud-develop.git ${NEW_BRANCH_NAME} | ||
| echo ::set-output name=NEW_BRANCH_NAME::${NEW_BRANCH_NAME} | ||
| - name: Create firecloud-develop PR | ||
| uses: actions/github-script@v6 | ||
| with: | ||
| github-token: ${{ secrets.BROADBOT_GITHUB_TOKEN }} | ||
| script: | | ||
| const result = await github.rest.pulls.create({ | ||
| title: '${{ github.event.inputs.jira_ticket }}: Update Cromwell version to ${{ github.event.inputs.new_cromwell_version }}', | ||
| owner: 'broadinstitute', | ||
| repo: 'firecloud-develop', | ||
| head: '${{ steps.update-and-push.outputs.NEW_BRANCH_NAME }}', | ||
| base: 'dev', | ||
| body: [ | ||
| 'This PR is auto-generated by', | ||
| '[Cromwell actions/make_publish_prs](https://github.com/broadinstitute/cromwell/blob/develop/.github/workflows/make_publish_prs.yml), using', | ||
| '[github actions/github-script](https://github.com/actions/github-script).', | ||
| '', | ||
| 'It updates cromwell from version ${{ github.event.inputs.old_cromwell_version }} to ${{ github.event.inputs.new_cromwell_version }}.' | ||
| ].join('\n') | ||
| }); | ||
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