Built site for gh-pages

hds-sandbox · Nov 26, 2024 · 4388df9 · 4388df9
1 parent 778ab49
commit 4388df9
Show file tree

Hide file tree

Showing 5 changed files with 20 additions and 18 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-66342df9
+a71a9d4b
diff --git a/TeachingModule/DataScreening_Multivariate.html b/TeachingModule/DataScreening_Multivariate.html
@@ -189,7 +189,8 @@
 </li>
 <li>Click on <strong><code>Jupyter Notebook</code></strong>.</li>
 </ol>
-<p>From there, you can select the notebook located in the directory: <strong><code>/training-quantitative-proteomics/03_Cluster_Analysis/</code></strong></p>
+<p>From there, you can select the notebook located in the directory:</p>
+<p><strong><code>/training-quantitative-proteomics/03_Cluster_Analysis/</code></strong></p>
 <p>This directory will be within the folder where you cloned the material in your terminal.</p>
 <p>You can now proceed with the multivariate analysis of the material.</p>
 <iframe src="https://nbviewer.jupyter.org/github/veitveit/training-quantitative-proteomics/blob/main/03_Cluster_Analysis/Multivariate%20analysis.ipynb" width="100%" height="1200px">

diff --git a/search.json b/search.json
@@ -60,7 +60,7 @@
     "href": "teachingmodule.html#part-3-data-screening-multi-variate-analysis-and-clustering",
     "title": "Breast Cancer Proteomics Module",
     "section": "Part 3: Data screening, multi-variate analysis and clustering",
-    "text": "Part 3: Data screening, multi-variate analysis and clustering\nFor the downstream workflow, we will follow the tutorial from the Jupyter Notebook embedded below.\n\nYou can work with the notebook both on your local machine and in the Proteomics Sandbox application.\nTo do so, download the repository containing the Jupyter Notebook by executing the following snippet in your terminal:\ngit clone https://github.com/veitveit/training-quantitative-proteomics.git\nIn the Proteomics Sandbox application:\n\nNavigate to the Applications menu in the upper left corner.\n\nGo to Development.\n\nClick on Jupyter Notebook.\n\nFrom there, you can select the notebook located in the directory: /training-quantitative-proteomics/03_Cluster_Analysis/\nThis directory will be within the folder where you cloned the material in your terminal.\nYou can now proceed with the multivariate analysis of the material."
+    "text": "Part 3: Data screening, multi-variate analysis and clustering\nFor the downstream workflow, we will follow the tutorial from the Jupyter Notebook embedded below.\n\nYou can work with the notebook both on your local machine and in the Proteomics Sandbox application.\nTo do so, download the repository containing the Jupyter Notebook by executing the following snippet in your terminal:\ngit clone https://github.com/veitveit/training-quantitative-proteomics.git\nIn the Proteomics Sandbox application:\n\nNavigate to the Applications menu in the upper left corner.\n\nGo to Development.\n\nClick on Jupyter Notebook.\n\nFrom there, you can select the notebook located in the directory:\n/training-quantitative-proteomics/03_Cluster_Analysis/\nThis directory will be within the folder where you cloned the material in your terminal.\nYou can now proceed with the multivariate analysis of the material."
   },
   {
     "objectID": "teachingmodule.html#personal-details",
@@ -102,7 +102,7 @@
     "href": "TeachingModule/DataScreening_Multivariate.html",
     "title": "Clinical Proteomics",
     "section": "",
-    "text": "For the downstream workflow, we will follow the tutorial from the Jupyter Notebook embedded below.\n\nYou can work with the notebook both on your local machine and in the Proteomics Sandbox application.\nTo do so, download the repository containing the Jupyter Notebook by executing the following snippet in your terminal:\ngit clone https://github.com/veitveit/training-quantitative-proteomics.git\nIn the Proteomics Sandbox application:\n\nNavigate to the Applications menu in the upper left corner.\n\nGo to Development.\n\nClick on Jupyter Notebook.\n\nFrom there, you can select the notebook located in the directory: /training-quantitative-proteomics/03_Cluster_Analysis/\nThis directory will be within the folder where you cloned the material in your terminal.\nYou can now proceed with the multivariate analysis of the material."
+    "text": "For the downstream workflow, we will follow the tutorial from the Jupyter Notebook embedded below.\n\nYou can work with the notebook both on your local machine and in the Proteomics Sandbox application.\nTo do so, download the repository containing the Jupyter Notebook by executing the following snippet in your terminal:\ngit clone https://github.com/veitveit/training-quantitative-proteomics.git\nIn the Proteomics Sandbox application:\n\nNavigate to the Applications menu in the upper left corner.\n\nGo to Development.\n\nClick on Jupyter Notebook.\n\nFrom there, you can select the notebook located in the directory:\n/training-quantitative-proteomics/03_Cluster_Analysis/\nThis directory will be within the folder where you cloned the material in your terminal.\nYou can now proceed with the multivariate analysis of the material."
   },
   {
     "objectID": "sdrf.html",

diff --git a/sitemap.xml b/sitemap.xml
@@ -2,54 +2,54 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/Create SDRF.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/coursematerials.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/contributors.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/teachingmodule.html</loc>
-    <lastmod>2024-11-26T09:44:58.233Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.270Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/colabfold.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/TeachingModule/AnalysisMSData_FragPipe.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/TeachingModule/Preliminarywork.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/TeachingModule/DataScreening_Multivariate.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/sdrf.html</loc>
-    <lastmod>2024-11-26T09:44:58.233Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.270Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/fragpipe.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/setup.html</loc>
-    <lastmod>2024-11-26T09:44:58.233Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.270Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/index.html</loc>
-    <lastmod>2024-11-26T09:44:58.229Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.266Z</lastmod>
   </url>
   <url>
     <loc>https://hds-sandbox.github.io/proteomics-sandbox/gettingstarted.html</loc>
-    <lastmod>2024-11-26T09:44:58.189Z</lastmod>
+    <lastmod>2024-11-26T09:49:55.226Z</lastmod>
   </url>
 </urlset>
diff --git a/teachingmodule.html b/teachingmodule.html
@@ -930,7 +930,8 @@ <h2 class="anchored" data-anchor-id="part-3-data-screening-multi-variate-analysi
 </li>
 <li>Click on <strong><code>Jupyter Notebook</code></strong>.</li>
 </ol>
-<p>From there, you can select the notebook located in the directory: <strong><code>/training-quantitative-proteomics/03_Cluster_Analysis/</code></strong></p>
+<p>From there, you can select the notebook located in the directory:</p>
+<p><strong><code>/training-quantitative-proteomics/03_Cluster_Analysis/</code></strong></p>
 <p>This directory will be within the folder where you cloned the material in your terminal.</p>
 <p>You can now proceed with the multivariate analysis of the material.</p>
 <iframe src="https://nbviewer.jupyter.org/github/veitveit/training-quantitative-proteomics/blob/main/03_Cluster_Analysis/Multivariate%20analysis.ipynb" width="100%" height="1200px">