linx 1.12

Functional:

• handle SGL breakend alt mappings with differing orientations
• ignore SGL-pair clusters in DM chains as simple types
• treat partial AMPs the same as AMPs
• invalid traversal allowed for known-pairs and exon-del-dup otherwise not
• Visualiser: add exon region for each of the IG genes

Technical:

• parse 1.10 fusion and cluster file for pipeline compatability
• Ensembl cache - ensure only 1 record per GeneName, prioritising HGNC external DB
• create output dir if doesn't exist

Bugs:

• correct upload of cluster data - Category for ResolvedType mismatch