lilac v1.2

Technical:

• log unmatched haplotypes as INFO instead of WARN

Config:

• to run in tumor-only mode, set tumor_bam and leave reference_bam blank
• change for somatic_variants_file -> somatic_vcf, and gene_copy_number_file -> and gene_copy_number

Bugs:

• fixed GRCh38 coordinates for INDEL allele and PON