Redux: Use samtools in Dockerfile

hartwigmedical · Dec 23, 2024 · 939181a · 939181a
1 parent 684dc0b
commit 939181a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/redux/Dockerfile b/redux/Dockerfile
@@ -14,7 +14,7 @@ RUN chmod +x ${RUN_SCRIPT}
 RUN micromamba install -y -n base -c bioconda -c conda-forge \
     procps-ng \
     "openjdk >=8,<=21" \
-    "sambamba>=1.0.1" \
+    "samtools >=1.14" \
     && micromamba clean --all --yes
 
 ENV PATH="/opt/conda/bin:/opt/conda/condabin:${PATH}"